RNA id: TU202874


Basic Information

Item Value
RNA id TU202874
length 1183
lncRNA type inter_gene
GC content 0.44
exon number 5
gene id G161165
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18899147 ~ 18901718 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgaatataaaaaccATTTGGGagatttatttaatgatgtatAACTTACATTAAATGGACAAAACAATCTTTCTACATTAACAGTCTCTTAAATTGGCAGCTTCCATGAGCactaataatttcaataaagcACATTTACAATAAGTAAAGACCTCTGTGTACAATCTTGTGGATTGTGTTACAATTTCAACAATGACATTGAACTAAAATACAGACTTGTGGGGGGATTAGAAAGGAAATTGACATtgcattacaattattacacTCAAAGATGTGAAAgtaccccccccacacactgatAGTGCATCATGCCCATGCCTGCATATTAAAGAGCAACTCGACCGCCGGCATCTGTGCACAGCTATTTACAGGAGAGAACGGCACAGAACATAAAGATATTACCGTAGTAAACACGTGGTTTAAAACAGTTCAGGGGAATCACTcttaataaaatagaaaagacTCAAAAGCCGGGTCACTTCAGAGCGGCTGGCAACAGTTTCGGGGGAAATCCTACCATGCAGCGGCCGAACCAAGGCTCTCGGCTTGGCCCGTGATCCGGCAGCTCTACCAATCCCTCATCCGTGCGGGAGCTACACGGACGTCTGCTTGTAGTTTTTGGTTTCCAAGACCTTCTTGCCACACATGGCGCAGATGCCTTTCTTGTACGCGCAGCCCTGGCAGTAGTTGGAGCCAGACTGGTGCACCGAGCTCTTACAAATCCTGCAGATGGCGAATCTCGACTTTCCATAGGGATCAAACCTCGCCTTTTTGGAAGTCAGTGCCTTGTTTTCATTTAGCTTCCGCCCACCGCTTTGTAGTGTTTCGGGCTCCATCCTTCCAGGTGTCAGGAGTGATGACACGCCCGAGTTTCTTCTCACACTTCTCACAAACCATCGTTTCACCcaccacagaaaaacaagaaaataaaaataagctacAAACGgaaaaggcaacaaaataaataaaacatctacgAAGTCTTATGACAACACTTCCTGTATTCGTATTTCCGTTTCCGAAACTAGAAGGGGTGTGATAGAAAGAAACTGCGCCTTTGTGTCCGCCATTTTGGATCAACCCTTCGCGGTGTTCGTATTGGTTTAATGGCGGATATACGCTCCAATGCAGACCGGAAATGACAGCAGTTTCATGGTTCTGATTCCGATGCTCTTCACCCCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202869 lncRNA downstream 11579 18886294 ~ 18887568 (-) True G161161
TU202859 lncRNA downstream 48263 18842976 ~ 18850884 (-) False G161153
TU202707 lncRNA downstream 553125 18262244 ~ 18346022 (-) True G161030
TU202718 lncRNA downstream 595049 18301084 ~ 18304098 (-) True G161039
TU202598 lncRNA downstream 859773 18038704 ~ 18039374 (-) True G160944
TU202931 lncRNA upstream 182394 19084112 ~ 19084976 (-) True G161206
TU203051 lncRNA upstream 553406 19455124 ~ 19457742 (-) True G161302
TU203098 lncRNA upstream 1190395 20092113 ~ 20093345 (-) True G161346
TU203157 lncRNA upstream 1323939 20225657 ~ 20225919 (-) True G161391
TU203216 lncRNA upstream 1438707 20340425 ~ 20345341 (-) True AMCG00001945
AMCG00001893 mRNA downstream 148 18888451 ~ 18898999 (-) True AMCG00001893
AMCG00001887 mRNA downstream 179172 18706123 ~ 18719975 (-) True AMCG00001887
AMCG00001879 mRNA downstream 235757 18661002 ~ 18663390 (-) True AMCG00001879
AMCG00001878 mRNA downstream 322583 18572048 ~ 18576564 (-) True AMCG00001878
AMCG00001876 mRNA downstream 535890 18358033 ~ 18363257 (-) True AMCG00001876
AMCG00001892 mRNA upstream 3477 18905195 ~ 18910940 (-) True AMCG00001892
AMCG00001891 mRNA upstream 73313 18975031 ~ 18979293 (-) True AMCG00001891
AMCG00001902 mRNA upstream 138735 19040453 ~ 19042847 (-) True AMCG00001902
AMCG00001903 mRNA upstream 148584 19050302 ~ 19052311 (-) True AMCG00001903
AMCG00001904 mRNA upstream 152012 19053730 ~ 19054245 (-) True AMCG00001904
TU202858 other downstream 48263 18835782 ~ 18850884 (-) True G161153
TU202574 other downstream 988294 17908754 ~ 17910853 (-) True G160925
TU202549 other downstream 1033829 17860139 ~ 17865318 (-) False AMCG00001863
TU202450 other downstream 1367157 17530866 ~ 17531990 (-) True G160817
TU202328 other downstream 1806698 17091418 ~ 17092449 (-) False AMCG00001843

Expression Profile