RNA id: TU202931


Basic Information

Item Value
RNA id TU202931
length 832
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G161206
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 19084112 ~ 19084976 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACGGGCTTATCCCCCCCGAGAAACCCGCGTACAGGCCCGCGTCGCTCCGCTCGGGTCACCGCACAGCCACACGACGCCGGGGTTACTGTGTATCCATTACCGCAGCTGAAAGTGCGCCGAGCCCCGCACTCACCTTGCGCGCCGGATCCGGCAAGAGCCACGGCGAGCAACAGCAGGACAGACTTCATGGTTTGAAGGAAACGCCGACGAGCCGCACAGAGATGAACCCGCAGCCGCTCCGCACAGGTGCGCCGCCCTCCCGTCCGACCGGTCCGACCAGGTGAGCAGAGGCTCGGGTTACAGCAGCGGACCAGCCGTCAAGCGCCCACAAAGACACGGTCCTGCGCGCTCGCACAGAGGAAGACTGCGGCTTGTGTTGAAAAgggtcgtcgtcgtcttcttcttcttcgtcttcttcttcttcttcttcttcttcttcttccaagGACAAGGGCTGTTTCTAGTCCGTCTTCCGGCTCGTCTCCTCAGTCTTTTCTCCTCCGCTTCCTCCTCTGGTTATTATATACACCTGCCTCTGTGACGTCAGCCACTGTCTCACTGAAACCGGGGGCGTGGCCAGGTGTATCGTGACCTCACCGGCTCACCtgtccccccctccctcccacaccATATTAGGATGTTCCTCAGAAACatcaaaagaaaccaaaaaacaacaaaacggCTGGTTGCCAAACTGCAGGTGATGCACCAACTGACTCAGCTGGGAAATGGTTTGTTGTAGAAGATTCGGTGAGGATCAACGTTTCGATTCACAATAAACactgaataacaacaacagaactCAAGGCGGCTGGACAGTGGGAGGCCGCC

Function

GO:

id name namespace
GO:0004055 argininosuccinate synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202874 lncRNA downstream 182394 18899147 ~ 18901718 (-) True G161165
TU202869 lncRNA downstream 196544 18886294 ~ 18887568 (-) True G161161
TU202859 lncRNA downstream 233228 18842976 ~ 18850884 (-) False G161153
TU202707 lncRNA downstream 738090 18262244 ~ 18346022 (-) True G161030
TU202718 lncRNA downstream 780014 18301084 ~ 18304098 (-) True G161039
TU203051 lncRNA upstream 370148 19455124 ~ 19457742 (-) True G161302
TU203098 lncRNA upstream 1007137 20092113 ~ 20093345 (-) True G161346
TU203157 lncRNA upstream 1140681 20225657 ~ 20225919 (-) True G161391
TU203216 lncRNA upstream 1255449 20340425 ~ 20345341 (-) True AMCG00001945
TU203248 lncRNA upstream 1353492 20438468 ~ 20438673 (-) True G161475
AMCG00001901 mRNA downstream 5955 19064520 ~ 19078157 (-) True AMCG00001901
AMCG00001905 mRNA downstream 29140 19054745 ~ 19054972 (-) True AMCG00001905
AMCG00001906 mRNA downstream 29487 19054329 ~ 19054625 (-) True AMCG00001906
AMCG00001904 mRNA downstream 29867 19053730 ~ 19054245 (-) True AMCG00001904
AMCG00001903 mRNA downstream 31801 19050302 ~ 19052311 (-) True AMCG00001903
AMCG00001911 mRNA upstream 29787 19114763 ~ 19115644 (-) True AMCG00001911
AMCG00001912 mRNA upstream 42286 19127262 ~ 19131079 (-) True AMCG00001912
AMCG00001910 mRNA upstream 92289 19177265 ~ 19186120 (-) True AMCG00001910
AMCG00001914 mRNA upstream 202302 19287278 ~ 19299869 (-) True AMCG00001914
AMCG00001913 mRNA upstream 226062 19311038 ~ 19323661 (-) True AMCG00001913
TU202858 other downstream 233228 18835782 ~ 18850884 (-) True G161153
TU202574 other downstream 1173259 17908754 ~ 17910853 (-) True G160925
TU202549 other downstream 1218794 17860139 ~ 17865318 (-) False AMCG00001863
TU202450 other downstream 1552122 17530866 ~ 17531990 (-) True G160817
TU202328 other downstream 1991663 17091418 ~ 17092449 (-) False AMCG00001843

Expression Profile