RNA id: TU203031


Basic Information

Item Value
RNA id TU203031
length 2665
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G161282
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 19455088 ~ 19457752 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaacattttattaacaaaacagtAAATTCCACTTGGGTAGCATTTCCAACAATGGATAAAAACGGCCTTgcaacaaaaatagaaaaacagaaacaaaaaagaataacaTTTTGGTAATCAGTgaacatattttgtatgtaattattacaCAAAGCACCGAATGGGTCAGGGGGTTAGACCTGTGAAGGCCATGCTGGGAGTTTAAATGTCTTCAGTGGTTTGAAATCACAGAATGGGACAGGTCCCAAAATCTGCCGATGCCACCCGCCGGCACCAGGAGACAGGAAGGAGGAATGGTGCCAGGGCCGCACATTGAAGAGCATGTTGGCTGGCAAAGCAATGAGCCGAATAAAGGTACAATGAGTACCATACAGCACCGCAACTGTAATACTGACTCAGCCGCCTCCACCGAACCCAACTGCGTTTCCCCGAGTGCGTGAGTGGTTTCCACGTGGTTCCACGCGGGTCGCTCAGAGAGTGCGGTCGGTGCCGGTCCAACAGAGGAGCGAGAACCGGGCTGAGGAATGGAATGTTTGTAGCAGTTTTAATCTCAACTCGTgaacaattttattaatatatatttatttatatctctTTCTGTTTTGGTTCCATGAAAGTCTGGAGAGACATCACTGTATGTTTGCTGTTCTGCAGCTCCACACGAGTCTCACATGCTACCAGAGCACTACACGCAAGAGCCGTGACCACAGACACATCAGACACTGTGCCCTGCCTGCGCTGGCCACCAATTTcttacatttctgctttttgtaaaattaaatagtaATCGTTTTGACTTTACAtatcttattgttattattattaagtactGTTTAATTACAGGGAGGCATTTTTTAATGGATGGACCCTAGAAACCTGGCAATCTTCTTCCTCCTATTCATCAGCTGGactgtttatatgtttttagtctcaggaattaaataaatacatttcacaatcatTGTCAGCCTCGTGTCACCCATGGCTAACAGAGGGTCACTTCATAGAGTGACACAGCATTGTCTAGGTTTCAGACAGAACCTGTTGTGAtccaaacagacaaacacatctAGGGCTCAGACTGGCTTCGCATGTCTCTGTGGTTCTGCAGGAGTCGAGTAAATAGACTCCGCTTACAGGTGCTATAAACTATTCAGATGTTGATGCCATGTTATCTGTCAGCTCGAGCATTGGAAGGTCATTGTCCAAATGTTCATGGCACCATGTCCAGATACCTGGCGTTTCTGTCCTTGTGATGCTGTCCTCACTGTCTGGTGTTGTTTGTTTCCTAACTAGTTCCTAGTTTGCTTCTTTGACATCTCACAGGAGACGCTGCTCTTTTAAAAGACTATCGTCTGTCCTTGCTGGCTTGGTTTGGGTTCTTTAGGACATCGCAGCCTCATGTTGTGACTGAGTATCACGGTGTCGAGACCTCAGGTATTTCAgttattgtataattattattagtagtaatagctgtagtagtagtaatgtacTGATTCTTTGTAATTAAGTTATGAGGAAAATTCAATTACTTGATTGTTTTACTGCCATCTTGTTTGAACGTATGACAGCGTGAAGGAAACCTTAGTTTTTACTCTCACTCTTTAATGGAGCGAAATATCTCCTGGAAATCCTAATGTCTGGTCAAACTGTGTTTTGATAAACCCTTGATATCTGATGTCCATTTCCCTTGAGTTTCATGTCAATGCGCTGATAAAGCCTGacacttggggaaaaaaataataacggCTGTGAGATATTCCCAATTCTCTATCAAACAGCTCTTCAAGTTAATTTCAGGTGCAGATTATTCAGCAATGAAGACTGCGGCTCATTCTGGAAATGAGGCAGGTTTTTTGGTTTAAGGAACATTTAGCTGCATAAGAAAGCTCATCCGCCATCACAGGTCCATTTGAAACCACTGACGCGCACGCGCACGCACACgaacacgcgcacacacacacacacacgcaggcaaCCACAGGCACACACTGCCGAGAACAGGCCGTCTGTCTCCCGAAACCCAGCAGCTGCACACGGATCTGGTGGCTCCGTCCACTCCGGCTTATTTGAAATTCCTCCTTCCTGTCTGTACAGTGTGAACATCTCTATTTCTCCCAGGGGGCATTGCAGCGATTCAGCCGGGCTCCGATCCAAGCCTAATGCATTCCCTTTGTGTTCTCCGAGACAGAACATTACAACAGGGCTTATTGCTGAGAAAAATCACCCCAAAATAACTTGAAACAGATAAAAGGATAGATTGCCAAGTCCATATGTCCACTTTTCTCTGtgacataacattttattttgaagataaATCTGCTGGCGAAAAgctcaaacaaatcaaaaagatgaacacaaaataaaagggaaaaatcacaaaaatcaATAGATGACAAACGTCAAAATAAAGCTTTTCCTTCGACACGTACGGCTTTCAACCATTTTGCTTCAGAGGACATAGAGAcgactaaaaatatataaattaataaaaaacatttcaatgcagagtgaaataaagggaaataaaaatatctcCTAATGAAGAAAAATCTCTCTTCTCCGCAGAACTGTAGTGTTGAAGTTACACATCCCTCGAATAACTTCAATATCAACTTAAGTTCACTTAGGTAAATAtttcattgattcatttatatgttt

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202880 lncRNA upstream 531416 18923449 ~ 18923672 (+) True G161170
TU202644 lncRNA upstream 1236057 18218764 ~ 18219031 (+) True G160985
TU202597 lncRNA upstream 1415714 18038704 ~ 18039374 (+) True G160943
TU202592 lncRNA upstream 1425272 18024196 ~ 18029816 (+) True G160939
TU202559 lncRNA upstream 1538034 17916795 ~ 17917054 (+) True G160910
TU203034 lncRNA downstream 50491 19508243 ~ 19508522 (+) True G161285
TU203158 lncRNA downstream 778425 20236177 ~ 20236391 (+) True G161392
TU203242 lncRNA downstream 1016919 20474671 ~ 20474889 (+) True G161469
AMCG00001915 mRNA upstream 12774 19441990 ~ 19442314 (+) True AMCG00001915
AMCG00001921 mRNA upstream 169201 19276693 ~ 19285887 (+) True AMCG00001921
AMCG00001920 mRNA upstream 185429 19260178 ~ 19269659 (+) True AMCG00001920
AMCG00001924 mRNA upstream 199775 19254800 ~ 19255313 (+) True AMCG00001924
AMCG00001923 mRNA upstream 200394 19244816 ~ 19254694 (+) True AMCG00001923
AMCG00001926 mRNA downstream 492700 19950452 ~ 19969912 (+) True AMCG00001926
AMCG00001937 mRNA downstream 623961 20081713 ~ 20087467 (+) True AMCG00001937
AMCG00001936 mRNA downstream 631885 20089637 ~ 20096591 (+) True AMCG00001936
AMCG00001935 mRNA downstream 676394 20134146 ~ 20167777 (+) True AMCG00001935
AMCG00001932 mRNA downstream 744757 20202509 ~ 20223949 (+) True AMCG00001932
TU202872 other upstream 553370 18899337 ~ 18901718 (+) True AMCG00001889
TU202803 other upstream 782667 18670282 ~ 18672421 (+) False AMCG00001880
TU202641 other upstream 1237950 18216575 ~ 18217138 (+) False AMCG00001883
TU202633 other upstream 1254233 18187902 ~ 18200855 (+) False AMCG00001881
TU202413 other upstream 1992154 17417351 ~ 17462934 (+) True AMCG00001846

Expression Profile