RNA id: TU203051


Basic Information

Item Value
RNA id TU203051
length 2619
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G161302
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 19455124 ~ 19457742 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaatcaatgaaaTATTTACCTAAGTGAACTTAAGTTGATATTGAAGTTATTCGAGGGATGTGTAACTTCAACACTACAGTTCTGCGGAGAAGAGAGATTTTTCTTCATTAGgagatatttttatttccctttatttcactctgcattgaaatgttttttattaatttatatatttttagtcgTCTCTATGTCCTCTGAAGCAAAATGGTTGAAAGCCGTACGTGTCGAAGGAAAAGCTTTATTTTGACGTTTGTCATCTATtgatttttgtgatttttcccttttattttgtgttcatctttttgatttgtttgagcTTTTCGCCAGCAGATttatcttcaaaataaaatgttatgtcaCAGAGAAAAGTGGACATATGGACTTGGCAATCTATCCTTTTATCTGTTTCAAGTTATTTTGGGGTGATTTTTCTCAGCAATAAGCCCTGTTGTAATGTTCTGTCTCGGAGAACACAAAGGGAATGCATTAGGCTTGGATCGGAGCCCGGCTGAATCGCTGCAATGCCCCCTGGGAGAAATAGAGATGTTCACACTGTACAGACAGGAAGGAGGAATTTCAAATAAGCCGGAGTGGACGGAGCCACCAGATCCGTGTGCAGCTGCTGGGTTTCGGGAGACAGACGGCCTGTTCTCGGCAGTGTGTGCCTGTGGttgcctgcgtgtgtgtgtgtgtgtgcgcgtgttcGTGTGCGTGCGCGTGCGCGTCAGTGGTTTCAAATGGACCTGTGATGGCGGATGAGCTTTCTTATGCAGCTAAATGTTCCTTAAACCAAAAAACCTGCCTCATTTCCAGAATGAGCCGCAGTCTTCATTGCTGAATAATCTGCACCTGAAATTAACTTGAAGAGCTGTTTGATAGAGAATTGGGAATATCTCACAGccgttattatttttttccccaagtgtCAGGCTTTATCAGCGCATTGACATGAAACTCAAGGGAAATGGACATCAGATATCAAGGGTTTATCAAAACACAGTTTGACCAGACATTAGGATTTCCAGGAGATATTTCGCTCCATTAAAGAGTGAGAGTAAAAACTAAGGTTTCCTTCACGCTGTCATACGTTCAAACAAGATGGCAGTAAAACAATCAAGTAATTGAATTTTCCTCATAACTTAATTACAAAGAATCAgtacattactactactacagctattactactaataataattatacaataacTGAAATACCTGAGGTCTCGACACCGTGATACTCAGTCACAACATGAGGCTGCGATGTCCTAAAGAACCCAAACCAAGCCAGCAAGGACAGACGATAGTCTTTTAAAAGAGCAGCGTCTCCTGTGAGATGTCAAAGAAGCAAACTAGGAACTAGTTAGGAAACAAACAACACCAGACAGTGAGGACAGCATCACAAGGACAGAAACGCCAGGTATCTGGACATGGTGCCATGAACATTTGGACAATGACCTTCCAATGCTCGAGCTGACAGATAACATGGCATCAACATCTGAATAGTTTATAGCACCTGTAAGCGGAGTCTATTTACTCGACTCCTGCAGAACCACAGAGACATGCGAAGCCAGTCTGAGCCCTagatgtgtttgtctgtttggaTCACAACAGGTTCTGTCTGAAACCTAGACAATGCTGTGTCACTCTATGAAGTGACCCTCTGTTAGCCATGGGTGACACGAGGCTGACAatgattgtgaaatgtatttatttaattcctgagactaaaaacatataaacagtCCAGCTGATGAATAGGAGGAAGAAGATTGCCAGGTTTCTAGGGTCCATCCATTAAAAAATGCCTCCCTGTAATTAAACagtacttaataataataacaataagataTGTAAAGTCAAAACGATtactatttaattttacaaaaagcagaaatgtaagAAATTGGTGGCCAGCGCAGGCAGGGCACAGTGTCTGATGTGTCTGTGGTCACGGCTCTTGCGTGTAGTGCTCTGGTAGCATGTGAGACTCGTGTGGAGCTGCAGAACAGCAAACATACAGTGATGTCTCTCCAGACTTTCATGGAACCAAAACAGAAagagatataaataaatatatattaataaaattgttcACGAGTTGAGATTAAAACTGCTACAAACATTCCATTCCTCAGCCCGGTTCTCGCTCCTCTGTTGGACCGGCACCGACCGCACTCTCTGAGCGACCCGCGTGGAACCACGTGGAAACCACTCACGCACTCGGGGAAACGCAGTTGGGTTCGGTGGAGGCGGCTGAGTCAGTATTACAGTTGCGGTGCTGTATGGTACTCATTGTACCTTTATTCGGCTCATTGCTTTGCCAGCCAACATGCTCTTCAATGTGCGGCCCTGGCACCATTCCTCCTTCCTGTCTCCTGGTGCCGGCGGGTGGCATCGGCAGATTTTGGGACCTGTCCCATTCTGTGATTTCAAACCACTGAAGACATTTAAACTCCCAGCATGGCCTTCACAGGTCTAACCCCCTGACCCATTCGGTGCTTTGtgtaataattacatacaaaatatgttcACTGATTACCAAAAtgttattcttttttgtttctgtttttctatttttgttgcAAGGCCGTTTTTATCCATTGTTGGAAATGCTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202931 lncRNA downstream 370148 19084112 ~ 19084976 (-) True G161206
TU202874 lncRNA downstream 553406 18899147 ~ 18901718 (-) True G161165
TU202869 lncRNA downstream 567556 18886294 ~ 18887568 (-) True G161161
TU202859 lncRNA downstream 604240 18842976 ~ 18850884 (-) False G161153
TU202707 lncRNA downstream 1109102 18262244 ~ 18346022 (-) True G161030
TU203098 lncRNA upstream 634371 20092113 ~ 20093345 (-) True G161346
TU203157 lncRNA upstream 767915 20225657 ~ 20225919 (-) True G161391
TU203216 lncRNA upstream 882683 20340425 ~ 20345341 (-) True AMCG00001945
TU203248 lncRNA upstream 980726 20438468 ~ 20438673 (-) True G161475
TU203244 lncRNA upstream 1018186 20475928 ~ 20478231 (-) True G161471
AMCG00001913 mRNA downstream 131463 19311038 ~ 19323661 (-) True AMCG00001913
AMCG00001914 mRNA downstream 155255 19287278 ~ 19299869 (-) True AMCG00001914
AMCG00001910 mRNA downstream 269004 19177265 ~ 19186120 (-) True AMCG00001910
AMCG00001912 mRNA downstream 324045 19127262 ~ 19131079 (-) True AMCG00001912
AMCG00001911 mRNA downstream 339480 19114763 ~ 19115644 (-) True AMCG00001911
AMCG00001916 mRNA upstream 1538 19459280 ~ 19460843 (-) True AMCG00001916
AMCG00001917 mRNA upstream 50255 19507997 ~ 19511624 (-) True AMCG00001917
AMCG00001918 mRNA upstream 57839 19515581 ~ 19519632 (-) True AMCG00001918
AMCG00001919 mRNA upstream 114457 19572199 ~ 19573651 (-) True AMCG00001919
AMCG00001927 mRNA upstream 163644 19621386 ~ 19634914 (-) True AMCG00001927
TU202858 other downstream 604240 18835782 ~ 18850884 (-) True G161153
TU202574 other downstream 1544271 17908754 ~ 17910853 (-) True G160925
TU202549 other downstream 1589806 17860139 ~ 17865318 (-) False AMCG00001863
TU202450 other downstream 1923134 17530866 ~ 17531990 (-) True G160817
TU202328 other downstream 2362675 17091418 ~ 17092449 (-) False AMCG00001843

Expression Profile