RNA id: TU203244


Basic Information

Item Value
RNA id TU203244
length 1506
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G161471
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 20475928 ~ 20478231 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTCTTGCTCGTTTGGCATCTTATCACTAAGCGATCTGAGAATCATATCCAGGCTGTccaatcaaacattttacagCATAAATTAATTAACCTGAGGTTCAATAGTTCTATGCTCATTagtttcatttcaaaacatttctatgACATCATTGTTTGATCTTCCTGTGGAATAAGTCTTCAAATACACATGTACTGTGCTGCTAATCCACACTTACTGCTGCTAATCCACACTTATGTACAAAACCACTGATGGAACAATTCAACAGGAAAGCTTTACTATTTGACAATGGAAAGGATTTAATTACAGTACTAAACTCTCCATgagtgacaaaataaaacacaagataaagtagcaaaaacaaatctattcaTGTCTGAGATAAAGGACGAGCAGGACTACACCTGCAGCTGCTTATTAGAGGACCAATTAGCGCACAATCAGGACTCACTCAGAATGTAGTTGAAGAGATTGCAGTAATTGTAATATGACTCAAACCTCTGGTCCAGAGTCGGCCCCCCCGCTGACTTTCGCATAGATGTGTCTGTAGTACAGCTCTTTATACAGAATCAAGAACACTGCATCTGTGAGGAATACAAATCAAGTTACTTAAGAATATTAGAACTTCAATGCACATGTATCCAAAACATTTAATCCTGCTGAAAACGGGGAGAACAAACGCACTGGTAGTTGATTCAAGGTGTCCCTTGAGGAGAAGGCTCTGAGCAGGATCATCTCTGTTTCCTGTGCAGTGTAAAAGCTCAGAGGATTAAGGAGAGGATCAAGTAGTACAGAGATGCATCACAGGGCAACAACAATGTCAGTCATGCACAACAatgcaacagcagcaacaacgtTCAAATACTCGACCTTAAGAAATACAGTTCTGCTGGAGAGTTTCTCCTGGGCTAAACATTGGTTCCTGGTCAGAATCTAAATATTGCATCTGAAAGCAAAGTAAGAATAGACACAGGAGGCCACAGTCTCTAAGCTTAcattatacagatatatatatacctatctATATCTACACaaagattatataaaatactagAATTTAACATTATCCAAGTAATAAATCCGTATCAGAAAAATTACATGCTTAGCCGGTAACTGAACCAtacacatgtttttattgtattaaaaacaaggCGAGAGCAAATAGTGGGAGATATAAAATACTGAGTTTTGAGTGAAATATTTCACTCACCATTTCCAACCAGGGAAGCGATGGCTTCAGCTTCAGGCCACGGGGAAGTCTTGAAAAACCTATCAGTCAGTTTGTTCCAGCTGGAGCTGTTCTCATAGACATCCTGAATCTCATAGATTTTCTGTTCAATGTTGTCACTGGACACTCGGTTGGCTTGCAACTCATACACCTTCTGATCAATGAGGTCAGAAATTGTCTTGTGAAAGTACTGCAGGAAGTTCTTGATCACTTCTGGGATGACATGGTACGTCTGCTGCTCATACTGGCGTTCATAGGCCAGGTCTGCTTTAGGGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203248 lncRNA downstream 37255 20438468 ~ 20438673 (-) True G161475
TU203216 lncRNA downstream 130587 20340425 ~ 20345341 (-) True AMCG00001945
TU203157 lncRNA downstream 250009 20225657 ~ 20225919 (-) True G161391
TU203098 lncRNA downstream 382583 20092113 ~ 20093345 (-) True G161346
TU203051 lncRNA downstream 1018186 19455124 ~ 19457742 (-) True G161302
TU203253 lncRNA upstream 77 20478308 ~ 20478719 (-) True G161480
AMCG00001949 mRNA downstream 7542 20443377 ~ 20468386 (-) True AMCG00001949
AMCG00001947 mRNA downstream 64471 20406331 ~ 20411457 (-) True AMCG00001947
AMCG00001948 mRNA downstream 83602 20363308 ~ 20392326 (-) True AMCG00001948
AMCG00001943 mRNA downstream 113477 20347992 ~ 20362451 (-) True AMCG00001943
AMCG00001945 mRNA downstream 128423 20344739 ~ 20347505 (-) False AMCG00001945
TU202858 other downstream 1625044 18835782 ~ 18850884 (-) True G161153
TU202574 other downstream 2565075 17908754 ~ 17910853 (-) True G160925
TU202549 other downstream 2610610 17860139 ~ 17865318 (-) False AMCG00001863
TU202450 other downstream 2943938 17530866 ~ 17531990 (-) True G160817
TU202328 other downstream 3383479 17091418 ~ 17092449 (-) False AMCG00001843

Expression Profile