RNA id: AMCG00002015



Basic Information


Item Value
RNA id AMCG00002015
length 777
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00002015
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 672284 ~ 676496 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCCTGTGGGGCGGTGTGCGTTGCTGCAGTGACGGTCAGTGACAATGGTGTCTGTTACCCCTGCTGTCCAGGATCGTTTGAGGTGAGGATCATCGGAGGCCATGAGGTCACGCCCTACTCGCTGGAGTACCAGGTGTCCATTCAGTTCAAGGAGCGGCACTACTGCGGAGGCACTCTGATCCGGGCGCAGTGGGTGGTTTCCGCAGCGCACTGCTGGAGGCCGAGCTCTGTGATCCAGGTTGTTTTAGCGGAACACGACCTCACTGTCAATGAGGGATACGAGCAGGTGTACAACGTCTCCAACGTGTTCATCTATACCTTCTACAACCCCAAGACCTTCAACGGTGACATCATGCTCATCAAACTCAGTGTCCCAGCGCAGCTCAATGCCCTCGTCCAGCCGGTCGCTCTGCCCGAGTTCCTCAGCTCAATCCCAGCCCAGACCATCTGCACCGTGAGCGGCTGGGGGGTCACCCTGATCTACAGCTACACCCTGTCTCCGGTGCTGCGCGCCGTGGACATCTCAGTGATTGCACAGAATACCTGCTCTTATCAGTACTATGGGAAGATCACGAACAACATGATTTGTGCTGGAAGTCCTGCAGGAGGGAAAGACTCCTGTCAGGGGGACTCTGGGGGACCACTGGTCTGCAATGGGGTTCTGGAAGGCATCGTCTCATGGGGGATAAGTTGCGCCAACCCAATTTACCCTGGCGTTTACACCAAGGTAGCGAACTACGTGAACTGGGTAGAGTGGATCATTAACAACAACTCCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU150675 lncRNA upstream 4227 667739 ~ 668057 (+) True G120254
TU150611 lncRNA upstream 549116 122542 ~ 123168 (+) True G120201
TU150603 lncRNA upstream 569011 100119 ~ 103273 (+) True G120193
TU150981 lncRNA downstream 1197716 1874212 ~ 1876528 (+) True G120494
TU151008 lncRNA downstream 1221438 1897934 ~ 1955361 (+) True G120516
TU151033 lncRNA downstream 1319931 1996427 ~ 2005914 (+) True G120536
TU151065 lncRNA downstream 1496974 2173470 ~ 2174499 (+) True G120563
TU151066 lncRNA downstream 1498091 2174587 ~ 2176442 (+) True G120564
AMCG00002014 mRNA upstream 103232 568090 ~ 569052 (+) True AMCG00002014
AMCG00002009 mRNA upstream 273798 334436 ~ 398486 (+) True AMCG00002009
AMCG00002005 mRNA upstream 355722 298511 ~ 316562 (+) True AMCG00002005
AMCG00002000 mRNA upstream 382551 280207 ~ 289733 (+) True AMCG00002000
AMCG00002002 mRNA upstream 396516 267808 ~ 275768 (+) True AMCG00002002
AMCG00002019 mRNA downstream 6250 682746 ~ 693983 (+) False AMCG00002019
AMCG00002017 mRNA downstream 23925 700421 ~ 705317 (+) True AMCG00002017
AMCG00002016 mRNA downstream 31787 708283 ~ 713002 (+) True AMCG00002016
AMCG00002018 mRNA downstream 53356 729852 ~ 738673 (+) True AMCG00002018
AMCG00002023 mRNA downstream 143717 820213 ~ 820962 (+) True AMCG00002023
TU150678 other downstream 6174 682670 ~ 684326 (+) False AMCG00002019
TU150681 other downstream 17126 693622 ~ 992764 (+) True AMCG00002019
TU151011 other downstream 1247526 1924022 ~ 1940816 (+) True G120518
TU151290 other downstream 2280412 2956908 ~ 2959475 (+) True G120742
TU151426 other downstream 2857318 3533814 ~ 3536428 (+) False AMCG00002098

Expression Profile