RNA id: TU150681


Basic Information

Item Value
RNA id TU150681
length 3070
RNA type TUCP
GC content 0.48
exon number 2
gene id AMCG00002019
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 682670 ~ 992764 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagggagagagggacggagggagagggacagagggagaaagagggatggagagagagggagagggacggATGGAGGTCTTTTTCTTGCCATGCACGCATTTATTTGGCCAGGCAGCACTGAATTGTGTCTGAGTTGCGCTGCAGGAAACCCTGAAGTGTGTCAGTGACGCTGGGCTGCTCTagtgagctgtgtgtgtattgcgTGTTcgtatgctgtgtgtgtgcgttcaTTTCCTTTCCATAGTGGCGTTCCTGTGCCGGAGAGCCTGAGAGCGCAGGACACTGTGGAGGACCAGCCGGTGCGGGAGCAGCTTGAGGAGtctgtggaggagatgaaggaggAGTCTGTGGAGGAGATGTAGGAGGAGtctgtggaggagatgaaggaggAGCCTGTGGAGGAGCctgtggaggagatgaaggaggagtctgcactgcacagccattttcagatctctccagagatgttcagtcgggttcaagtctgggctctggctgggccactcaaggacattcacagagttgtcctgtagccactcctttgttatcttggctgtgtgcttagggtcgttgtcctgttggaagattaaccttcgccccagtctgaggtccagagcactctggagcaggttttcatcaaggatgtctctgtacatttcTGCATTGATCTTTCCCTCGAttctgactagtctcccagttcctgccgctgaaaaacatccccacagcatgatgctgccaccaccatgcttcactgtagggatggtattggccaggtgatgagcggtgcctgttTTCCaccagacatgagttcaatctttgtttcatcagatcagagaattttgtttctcattgtctgagagtccttcagatgccttttggcaaactccaggtgggctgtcatgtgagtgctgcagagatggttgttcttctggaaggttctcctttctccacagagacacgctggagctctgtcagagtgaccatcgggttcttggtcacctccctgactaaggcccttctcccccgatcactcagtttggccaggcggccagctctaggaagagtcctggtggttccaaacttttTCCTTTTACGGATGAtagaggccactgtgctcattgggaccttcaatgctgcagacaatcttgtctcggaggtctacagacaattccttggacttcatggcttggtttgtgctctgacatgcacaaactgttaactgtgggaccttatatagacaggtaaACAATGCAAATCGTATTATGGTTGAAAGTGTTCATGTTCGAGTCACTGGTTTCTCATCttattcagatgtttttgtatattttattttgaaaaagtaatAGAACTCTTAGTGTTTAGTTTGGATATGGAGAGCAGTGACACCATCTAGTGAAATATTCttgaacaatttaaaatctccttttctgttttccctTTCTGGGGAGTGAACTCTGTCCCTTTGAATGGACCATCTGCTGGACACGACCTTCCTCTGGACTGGTGTCAGATGGACAGGGTTAGAAATGACCATTGACTGCTGCCAGGCTGGCCTCTGTGCTCCCCTCGTTTCAGTGTGTCTTTAGTGACCGGGGTCTAAAGGTGCAGCAGTTGACGCACCAGTCTGTGCATCGGTGACTGCTAACCTGTTCAGTCATTCAGCCAGGAAGGACACAACCTTTTATTAGACACGCTGAGCACAGGCTGAACTGTCCATTTTGCAAGCGGTGAAAAGGgtcctgaaccttttcaccctggaacagaggagactacatgaggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagaggcgtcacaatctggaatacactacccagtgatgtggctgaagagacaatttgggaacattcaaaaacagaatggataggatccttggatcacttagttattaatagacaccaaacgagcatgatggggcgaatgacctcctctcgtttggacactttcctatgttcttatgtcctCAGATTCAAATCCAGCCAAAATGCACCCATTTCTGAATGAGACCGAATGAACTGAAGTAGTAACGGCACACAAagcacaacacagacagaccccGAGCGGAACAAGATCATCATGTGACTTCCCTTACAGACGCCCCTCAATGGCTTTCTGAATGTCAGGAGAAGCCAGGTTTACTGTCTGTGTTGAAAAGCTGTGGCAGCTCCTCCCAAATGAACCTGGTGCCAAAGTGGCTTGCAAGCTGAAGACTGGGTGGACAGGTTTATGTTTCGGTTTGCAATTTCGGTGAGCGCCTTAGTGTCGGTCGAGTGCTTGTGGGAGTCGAGGTGTTTGATGACTCCAGGGAAAGGCGGTCGGTCCTCGGGGTGCCACATCCAGCACTGCTTCATCAAGTCATACCTGGAGGGGAAACAGAAAAGCCAAACAGGAGGCTGGAGACATCAGTGGCAGCCTGCATTCGGGCTGCACTTTTGAGTCTCCGTCAGCCttttcaaatacagtacattgaTGCGGAGGCAGCAGTATGACAATGGTTTCAGGGCTAGTGGCTGAGCATGAGGGATTTCATGCATGAAAATGAGTCGTAAAGGCTTTAGACAGGGGTCTCTAACTCAGTTATTGgagttctcaattacttaattaaccttatatatttgttttaaatcagttagacatttgatattgttttaagGTCTAGAAACAATctgaaattgtttaaatatgtaaaatgtgtgtacTGTCATGTACAGTGTGTAGAGAAGTATCACATGTATTCATCATTCAGCTCATCAGAAGCCCACCGAACAGTACAGAACATGTGTCAGCCGCTGCTTCAGTGATCCTGCCCACAGTTTGTCTTGTAGTTGGACTGCGACGCATTCAAAGGCATGCTACAGTCATACAATAGGGACTTCTGATGTACACAGAGCAGTCATGTCACTCTGAACACGCAGGGAACATGTCCTGTCATTGGCTTGTTGCATTCTGTGCGATCGTGTGCCGTCAGTGACGCTTTGCTTTGTCTGTTGATCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150675 lncRNA upstream 25565 667739 ~ 668057 (+) True G120254
TU150611 lncRNA upstream 570454 122542 ~ 123168 (+) True G120201
TU150603 lncRNA upstream 590349 100119 ~ 103273 (+) True G120193
TU150981 lncRNA downstream 881448 1874212 ~ 1876528 (+) True G120494
TU151008 lncRNA downstream 905170 1897934 ~ 1955361 (+) True G120516
TU151033 lncRNA downstream 1003663 1996427 ~ 2005914 (+) True G120536
TU151065 lncRNA downstream 1180706 2173470 ~ 2174499 (+) True G120563
TU151066 lncRNA downstream 1181823 2174587 ~ 2176442 (+) True G120564
AMCG00002015 mRNA upstream 17126 672284 ~ 676496 (+) True AMCG00002015
AMCG00002014 mRNA upstream 124570 568090 ~ 569052 (+) True AMCG00002014
AMCG00002009 mRNA upstream 295136 334436 ~ 398486 (+) True AMCG00002009
AMCG00002005 mRNA upstream 377060 298511 ~ 316562 (+) True AMCG00002005
AMCG00002000 mRNA upstream 403889 280207 ~ 289733 (+) True AMCG00002000
AMCG00002027 mRNA downstream 16458 1009222 ~ 1028565 (+) True AMCG00002027
AMCG00002032 mRNA downstream 172097 1164861 ~ 1179295 (+) True AMCG00002032
AMCG00002033 mRNA downstream 209486 1202250 ~ 1228078 (+) True AMCG00002033
AMCG00002034 mRNA downstream 318433 1311197 ~ 1317051 (+) True AMCG00002034
AMCG00002040 mRNA downstream 393904 1386668 ~ 1388576 (+) True AMCG00002040
TU150678 other upstream 9296 682670 ~ 684326 (+) False AMCG00002019
TU151011 other downstream 931258 1924022 ~ 1940816 (+) True G120518
TU151290 other downstream 1964144 2956908 ~ 2959475 (+) True G120742
TU151426 other downstream 2541050 3533814 ~ 3536428 (+) False AMCG00002098
TU151430 other downstream 2544855 3537619 ~ 3539554 (+) False AMCG00002098
TU151873 other downstream 4226066 5218830 ~ 5223498 (+) True AMCG00002152

Expression Profile