RNA id: AMCG00002027


Basic Information

Item Value
RNA id AMCG00002027
length 4794
RNA type mRNA
GC content 0.55
exon number 14
gene id AMCG00002027
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1009222 ~ 1028565 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTGCGCAGTGTCTCAGGATGGCGTGAGCTCGGcattttgaagatatctttattGTTCTCATTAATTTGTCCACGGATGCAGTTTAAATAAAGAGCTGTGCGGTTTGAATCCGACTCAAGGTGACCCATGGAGCTGCCCAACTACAGCCGGCAGCTGATGCAGCAGCTGCACGCACTGAGGAAGGAGGGCCAGTTCTGCGACTGCACCATCCTTATCGGCACAGTGCCCCACAAGGCCCACAAGCTGGTGCTGTCTGCTGCCAGCCTGCTCTTCAAGTCCCTACTGGAGAGCTCTGACACCATCTCCATTGACCCGTCCGTCGTCACCTCCGCGGAGTTCTCCAGCCTCCTGGAGATGGTCTACACGGGCAAGCTGCCCCCCGGTAAGCACAACTTCACCAGGGTCATCTCGGCGGCGGACAGCTTGCAGATGTTCGACATGGCAGTCAGCTGCAAGAACATCCTCAACCAGCTCATGAAGCCGCCAGCCACCACGGCAGAGCCCCCCGTTAAAGTCCCCCGCTTGGAGCCGGAGGCGGACTCCAGGGTCCCTGTCGAAGAGCAGGTTTCTGGGCCTGTGGCTGATGAGATGGAGGAACACCAGGAAGAAGCGCCCGTATGTAGGCCGAAGGAGCCCCTTGATCGACCCAGGCGACCGGCTGAGAATGTACCCAAGAATGGCGGCGGTCCCGTTCCCAAACACACTCTTTCTGGTCCACTTCACGAGGACAGTGAGAAGGACCTGGCGTTCTTGCTTCAGAGCAAAAACAGGATTGCCGAAGCGATCGGAGACGTGCAGCCGCTGATCAGAGTGGTGGAGAAATGGGAAGCGATTTCAAGGGCGGAGAAACAGATTATTTTAGACTGCTGCCAGGGCGATCTGGTGGGGCCCAATATTTTCCACAGGCTGCTGAGCAGTGTGACCAGCGAGAAGCAGCTGTCCGCCCAGACTGTGCTCACCCTGCTGGAGCTCTTCAGAGAAGTCAGCCCCCGCCTGGCCCCCGTGCTGCACAAAACGTCTCGCAGGGACGAGTCCAGAGATCCGGTTCCTGCAGAGAGGACGCTGTCTCGCTTGCTTGAGGAGAACGCCGAGCAGCTGATTGCCAGCGTCCCTCACCTGAGTCCTGTTGTGGAGAGCTTGGAAGCTGAAGCCAAAGGCCTTCTGACTGACATAGAGAAGCAGGTCATCCTTGGCTGCTGCAAAGGGGCGTCTGCCAGCGAGGCCATGGCGGCTCTGCTGAGTAAAGTGACGCTGGAGAACGCGGTGGACGGGAGTAGGTTGCTGAAGCTGCTCCACAGCGTCAAGGCCAGCTTCCCCAGCCTGCCTCCCATCCTGGACGCCATCGACGCAGAGTGGGCCTCCATTCAGGGCACAGGTAGGGTCAGTCAATCATCTGGCATGGTTCTGAAGTACACACACAACCACCAGGCCCAGGGACTGCGAGTAACAAGACGCAAACAAACACGGTGGTCTGTCTCCCCAGAACAGAGGAGCCGGGAGGAATATGGAGCCGATCTCTTGAGGAGATATGGGAAGCAGCTCTCTGAGTCCCTCTGTGATGCCAAACCTCTTCTTCCCATCCTGGCTGCGGCTGAGGACCTGCCCTCTGCAGAGCGAGAGTGGCTGAAGGCCTGTCTGGCGGAGGACGGGGGTGTGGACAAGGCGCTGTCcgtggcactggaggagcgatGCATGCAGGCCATGTCAGTGTGGAGACTGCTCCTCAGGGCCAGGTCGGAAATCCCCAGACTGGACCGCCTGATCCAAGACATCAGCAAGGAACCAGAAGATGACCAATTCATCCAGTCAGttcTGGATGTAGAGGAACGGATGCTGGACATCTTATTTAGGCACAGAGATCTGGTGACACAGGTTATCAGTGACCTGGGAGTCTTGacgggcagagagacacagggtgGAGGCTGCCCAGCAGGAGATGTCTTCGAGttcataAGAAGCTGCTCAAAGATGGAAGACCCGGGCGAGGCAGTGAGGACTCTTCTGGACCGGATTCTGGAGGAGAAATCCCTGGCAGCTCAACCTTTCTGCCAGCTGTTGATCATCAGTAAGGAGTCTTTCCCAACAATGCAGCCCTTCATAGAAGAGCTGGAGCAAGCAGAGCGAGAGGGGTGTTGGAAGGAGCCGCTGCAGAAACCCCAGACCctgcaggaggaagaggagggggacgTAGAtgaggaggacgaggacgaggatgAGGAGAAGGATCCAGACGCGGGGGGCGACAAGAAGGGCCCCAAGAAAGCGGGGGTAAAACAGAGCTTCCCCTGCCAGTGGTGCGGCAAGGCCTTCGGGTTCAAGTGCCGCATGGACGTGCATCGGAAGAGGTGCCGTCTGTCCCGGGAGACGCAGCAGAAGTGTCCGCAGTGCCCCGCCGAGCTGCCCACCCCCAAGGCCCTGCAGCTCCACCTCGCCAAGAGCCACGGCAGCCCCCCCcgcaagaagaagaagaaacgcCTCGAACCAGTGACCTGCGACATCTGCGGGAAGACTTTTGCCCACCAGTCAGATATCGACGACCCGTACGACTGCCAAAAGTGCCGCATGAGTTTCGGGTCTCTGGAGGAGCACCGGAAACACATCCAGGAGTCTCACCCCAAAGAGTACCATCCCTGTGTCGTGTGCGGCAAGATCTTCAACACGGCGACCCTGCTGGAGAAGCACATGGTCAGCCACGTGGGGGGCAAGCCCTACAGCTGCGAGATCTGCAACAAGGCCTATCAGCAGCTCTCTGGGTTGTGGTACCACAACCGCACCAATCACCCCGAGGTGTTCGCAGGCCAGAGCCACCGCTCTCTGAAGATCTCCCCATTCCAGTGCTCCTCTTGCGACAAGACCTTCCTTAGCAGCGCCGCCCTCGGCAAGCACGAGAAGACTGTGCATCCAGGCGTCCAGCTCTTTAAGTGCCTGTACTGCCCGGCCTCCTTCCAGACCACTGGGGACCTGCAGCAGCACCTGTGCAGCCGGCACTTCAACCAGGAGGGGGAGGCCTTCGGCTGCGGCCACTGTGACCTGATCTTCCCCCTCcagcaggagctgcaggagcACTACCTCACGCAGCACCCTGGGGTGGGCAACGCAGACGCCCAGCCCTCCACGCAGATGGTGATCCAAACCACGGAGCAGCCCGGAGACCCCGAGCAGCTGATCGCGCTGGACCAGTCTCACATGGCGGGCTCCCAGGTGTACGTGGCGCTGGCCGACTCCCAGGACAACGCCACGGCGCCGGAGATCGTGGCCGTCAACATGGACGACCTGCTGGACGGCACGGTCACCTTCATCTGTGGTGACGCCCAGTGAGAGCTCGTCCCGAGAAGACGCTGATCGGTGGCAGTGCCTCTGTTTTTAAATCCGATGGGAATTAAGTGGTTCGGTCCATTTGAATTTCGGTACCGGTGGCTTTGAAGAAACTATCAGAGTCTGCCAAGTATTAGAAGCTGCTGTCTGGATATTGGGCCTTGAAGGAGAGTTGGTGTTCGTGTTTCAGATTTCCTTCACATTAATGAGTAGCCGCTAgaagatttgtgtttttcctcattGCCGGGACGTTTTGTTCATGTTAGGCACAGACTCTGTCCCAACACATACAGTGTCGAGACGGACGCGGCTCTTCCTGGAGAGACTGTGGCACTGGTggtcttttttccccttctagTGACCGCTGTCTCCCTGGCAGCCCTGTATGTGAGAGACGCTCTTCTATTGAAAAGGCGTTCGGAGGGAAACGGATTCAGAGTACTGTGTGCAAAGTTTGACAGCCATTCCTCTCACTAAGACTGCAACTGTGATGTGGGAAGCGGTGTCTAAGTGTTTTGTGTATTGTGCGTTTAGAGGCCCATGTGTTTTCCCACAGCAGTTGCCATTGAGGAGCACTAGGGCCTGCAATGAATGTGAATGTGCTGAAATGGAAGATGCGATCATCAGGTTTATGACTTTTTGTAATCatgttgtgctgttgtttttgtttgtttcatatctGTGATATCGGTAGTTCGAGtggatgtgtatttattgattctCAGGAGGGCATTATGAAGTACCGCTGTGAAACCCAGCATTCTTGGTTTCATCTGCATTTTAAGGAAGAGGCAGAAATCCAGTCCAGTCGCCCGACAGCAGGGCTACGCTCTGCACAGGTGCCATTCGTGTCACAGAGAAATACGTCTGACTTGCATATGATTAGACTCGCTCCTTCTCAGCAGATATTGTAAAAGAGGAGCAGGTCTGACTGTCAGGCCTTTAAAAGTCCTGGCTCCGAGGTTATTAACGTGAACCTGTGCACTGTCCGATCCGTCTCACTGCTTGACGGTTTTGTGTACGGTGTGTGCCGGCGGGAAGCCAGCTGTGCCGCTTGTTTGGATCAGGAAATGCGAGGTCAGATAAAGCATCAGTCCTTTCTTCATACTATTGTTGCACAGTGATGATTCATGGGTCTGACGATAACAGCATAGTTTTAACAGTGACCTGAGTATACAGCGCTGAATAACAAGCTGACAGTTTTGATCAGATTGACAATGTTATCATCAGGTGTCAGAGCTGACCTTAAATTATCCCTCAACCGGGAGCCTTTTGTTCTAGTGATTTCTGCCCTTCTGTGAAACGCAGCTTTGAGGTGGAGTGTGTGTGAAATGGTAAAGGATGAAGAATGGCTTTTTAAATCCCTCGTTACGGTGTTACTCAAGCGATTCGCATGTGGGCTTTCCCTTGTACTGAAAGATGGAGGTAAAGAATGCAGACGgagaatgtttttcttattgctgttattatgaGCACT

Function

GO: NA

KEGG:

id description
K10512 ZBTB40; zinc finger and BTB domain-containing protein 40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150675 lncRNA upstream 341165 667739 ~ 668057 (+) True G120254
TU150611 lncRNA upstream 886054 122542 ~ 123168 (+) True G120201
TU150603 lncRNA upstream 905949 100119 ~ 103273 (+) True G120193
TU150981 lncRNA downstream 845647 1874212 ~ 1876528 (+) True G120494
TU151008 lncRNA downstream 869369 1897934 ~ 1955361 (+) True G120516
TU151033 lncRNA downstream 967862 1996427 ~ 2005914 (+) True G120536
TU151065 lncRNA downstream 1144905 2173470 ~ 2174499 (+) True G120563
TU151066 lncRNA downstream 1146022 2174587 ~ 2176442 (+) True G120564
AMCG00002030 mRNA upstream 22839 967777 ~ 986383 (+) True AMCG00002030
AMCG00002028 mRNA upstream 51849 952521 ~ 957373 (+) True AMCG00002028
AMCG00002029 mRNA upstream 64777 921970 ~ 944445 (+) True AMCG00002029
AMCG00002025 mRNA upstream 104069 896356 ~ 905153 (+) True AMCG00002025
AMCG00002024 mRNA upstream 113652 872605 ~ 895570 (+) True AMCG00002024
AMCG00002032 mRNA downstream 136296 1164861 ~ 1179295 (+) True AMCG00002032
AMCG00002033 mRNA downstream 173685 1202250 ~ 1228078 (+) True AMCG00002033
AMCG00002034 mRNA downstream 282632 1311197 ~ 1317051 (+) True AMCG00002034
AMCG00002040 mRNA downstream 358103 1386668 ~ 1388576 (+) True AMCG00002040
AMCG00002041 mRNA downstream 363695 1392260 ~ 1410838 (+) True AMCG00002041
TU150681 other upstream 16458 693622 ~ 992764 (+) True AMCG00002019
TU150678 other upstream 324896 682670 ~ 684326 (+) False AMCG00002019
TU151011 other downstream 895457 1924022 ~ 1940816 (+) True G120518
TU151290 other downstream 1928343 2956908 ~ 2959475 (+) True G120742
TU151426 other downstream 2505249 3533814 ~ 3536428 (+) False AMCG00002098
TU151430 other downstream 2509054 3537619 ~ 3539554 (+) False AMCG00002098
TU151873 other downstream 4190265 5218830 ~ 5223498 (+) True AMCG00002152

Expression Profile