RNA id: AMCG00002032


Basic Information

Item Value
RNA id AMCG00002032
length 720
RNA type mRNA
GC content 0.62
exon number 2
gene id AMCG00002032
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1164861 ~ 1179295 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCAGGCATGTTGCCATTGTAGCGTGGGATGCCATCAATGAAATGGACGAATACTTCAGCCCCATCCACACCTACCAAGTGTGCAACGTCATGAGCCCCAACCAGAACAACTGGCTGCGCACCAACTGGATCCAGCGTGACGGCGCCCGGCGTATCTACATCGAGATCAAGTTCACGCTGCGCGACTGCAACAGCATGCCGGGGGTCTTGGGCACCTGCAAGGAGACCTTCAACCTCTACTACTACGAGACAGACCGCGACGTGGGCACCAACATCTGGGAGAGCAAGTTCGCCAAGATCGACACCATCGCAGCCGACGAGAGCTTCACCGGGGTGGACCTGGGCGTGCGGAGGCTCAAGCTCAACACTGAGGTCCGTGGCGTGGGACCCCTGAACAAGAGGGGCTTCTACCTGGCCCTGCAGGACATCGGAGCCTGCATCGCCATCGTGTCGGTCAGGGTCTACTACAAGCGCTGCTCAGCCATGGCGCGCAACCTTGCCATCTTCACGGACGTGGTGACAGGCGCCGACTCGTCCTCCCTGGTGGAGGTGCGGGGGGAGTGTGTGGACCACGCCGAGGAGCGGGACACCCCCAAGATGTACTGCAGCGCCGAGGGGGAGTGGCTGGTGCCCATCGGGAAGTGCATCTGCAGCGCCGGGTTCGAGGAGCACCGAGACACCTGCATCGGTAAGCGAACACCCTCGCAGATACCATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150675 lncRNA upstream 496804 667739 ~ 668057 (+) True G120254
TU150611 lncRNA upstream 1041693 122542 ~ 123168 (+) True G120201
TU150603 lncRNA upstream 1061588 100119 ~ 103273 (+) True G120193
TU150981 lncRNA downstream 694917 1874212 ~ 1876528 (+) True G120494
TU151008 lncRNA downstream 718639 1897934 ~ 1955361 (+) True G120516
TU151033 lncRNA downstream 817132 1996427 ~ 2005914 (+) True G120536
TU151065 lncRNA downstream 994175 2173470 ~ 2174499 (+) True G120563
TU151066 lncRNA downstream 995292 2174587 ~ 2176442 (+) True G120564
AMCG00002027 mRNA upstream 136296 1009222 ~ 1028565 (+) True AMCG00002027
AMCG00002030 mRNA upstream 178478 967777 ~ 986383 (+) True AMCG00002030
AMCG00002028 mRNA upstream 207488 952521 ~ 957373 (+) True AMCG00002028
AMCG00002029 mRNA upstream 220416 921970 ~ 944445 (+) True AMCG00002029
AMCG00002025 mRNA upstream 259708 896356 ~ 905153 (+) True AMCG00002025
AMCG00002033 mRNA downstream 22955 1202250 ~ 1228078 (+) True AMCG00002033
AMCG00002034 mRNA downstream 131902 1311197 ~ 1317051 (+) True AMCG00002034
AMCG00002040 mRNA downstream 207373 1386668 ~ 1388576 (+) True AMCG00002040
AMCG00002041 mRNA downstream 212965 1392260 ~ 1410838 (+) True AMCG00002041
AMCG00002038 mRNA downstream 253813 1433108 ~ 1438698 (+) True AMCG00002038
TU150681 other upstream 172097 693622 ~ 992764 (+) True AMCG00002019
TU150678 other upstream 480535 682670 ~ 684326 (+) False AMCG00002019
TU151011 other downstream 744727 1924022 ~ 1940816 (+) True G120518
TU151290 other downstream 1777613 2956908 ~ 2959475 (+) True G120742
TU151426 other downstream 2354519 3533814 ~ 3536428 (+) False AMCG00002098
TU151430 other downstream 2358324 3537619 ~ 3539554 (+) False AMCG00002098
TU151873 other downstream 4039535 5218830 ~ 5223498 (+) True AMCG00002152

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007095 False 4661 lncRNA 0.47 19 NC_007122.7 38614476 ~ 38876352 (+)