RNA id: AMCG00002040



Basic Information


Item Value
RNA id AMCG00002040
length 793
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00002040
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1386668 ~ 1388576 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGAAACCTGCTGggtaggggctctccaggaccagagctggaCACCCCCAGATGTAGAAACCGCtaattgacattttaacaatatGGCATTGGGTACTTCAACAGAGAAGCGTTAACTGATGGAATACAGAAATTGTACAGCGCCCTGAAACGCTTCCACATATATCAGCAGAAGCAGGACAGAAGCTGTCATCCTTGGCAACAATCCTTTTAAAATCTGGTCAACCAATAAGGATCACTTTGAATCTATCCATTGTTTAGAGCTTCAAGATCTGGAGATATGATGAAGCACAATGGATACGCCCAGTTGGGTCCTCCCCCAGCTGATGACCGTGACAAGTTTGAAGCTCGAGCCAAGCACGTCGGGTATCTGAAAGGCTTCTCTCATATCCTGTTCAGTCCAGATGGGACTATGTTTGCAGTCCGTGGGGCAGATATCTATTGTGGGCCTCCCCCGTCTGATCCAAAAGAAGACTGGCTAGAAGTGAAAGCGAAGTGTGTTGGAAAAGCTGATTGGAATCAATTTCGATTGCTCTTCTTCCATCCTGACGGCATGCTCTATGCTATTACAAAGGAGGAGAAACTGTTCAAAGGTCCTCCTCCTGATGACATACATGTGTCCTGGCTCAGTAGTGTGGCAACAAAACTAGGAAATGATTATGGGGGCGAGATCTACTGCGCACCCCCACCgaaaaatgtcaatgtcaattgGATTGGTGAAGCACAGGGTTGTGGCCGTGCCTATCAGCAGTACGAGATCCTCGCATTCACAGAAGATAAATCCACCAGCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU150675 lncRNA upstream 718611 667739 ~ 668057 (+) True G120254
TU150611 lncRNA upstream 1263500 122542 ~ 123168 (+) True G120201
TU150603 lncRNA upstream 1283395 100119 ~ 103273 (+) True G120193
TU150981 lncRNA downstream 485636 1874212 ~ 1876528 (+) True G120494
TU151008 lncRNA downstream 509358 1897934 ~ 1955361 (+) True G120516
TU151033 lncRNA downstream 607851 1996427 ~ 2005914 (+) True G120536
TU151065 lncRNA downstream 784894 2173470 ~ 2174499 (+) True G120563
TU151066 lncRNA downstream 786011 2174587 ~ 2176442 (+) True G120564
AMCG00002034 mRNA upstream 69617 1311197 ~ 1317051 (+) True AMCG00002034
AMCG00002033 mRNA upstream 158590 1202250 ~ 1228078 (+) True AMCG00002033
AMCG00002032 mRNA upstream 207373 1164861 ~ 1179295 (+) True AMCG00002032
AMCG00002027 mRNA upstream 358103 1009222 ~ 1028565 (+) True AMCG00002027
AMCG00002030 mRNA upstream 400285 967777 ~ 986383 (+) True AMCG00002030
AMCG00002041 mRNA downstream 3684 1392260 ~ 1410838 (+) True AMCG00002041
AMCG00002038 mRNA downstream 44532 1433108 ~ 1438698 (+) True AMCG00002038
AMCG00002039 mRNA downstream 75668 1464244 ~ 1472376 (+) True AMCG00002039
AMCG00002045 mRNA downstream 314654 1703230 ~ 1709587 (+) True AMCG00002045
AMCG00002046 mRNA downstream 361639 1750215 ~ 1750664 (+) True AMCG00002046
TU150681 other upstream 393904 693622 ~ 992764 (+) True AMCG00002019
TU150678 other upstream 702342 682670 ~ 684326 (+) False AMCG00002019
TU151011 other downstream 535446 1924022 ~ 1940816 (+) True G120518
TU151290 other downstream 1568332 2956908 ~ 2959475 (+) True G120742
TU151426 other downstream 2145238 3533814 ~ 3536428 (+) False AMCG00002098
TU151430 other downstream 2149043 3537619 ~ 3539554 (+) False AMCG00002098
TU151873 other downstream 3830254 5218830 ~ 5223498 (+) True AMCG00002152

Expression Profile