RNA id: TU150962


Basic Information

Item Value
RNA id TU150962
length 2302
lncRNA type sense_over
GC content 0.41
exon number 3
gene id AMCG00002044
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1486551 ~ 1490567 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACACACCGGAACCGGCCTGTTACACCGGAAGTGCGCGCTACCTTCGCGGAACCGCACCGGAACTCCACAGGTGTTACACCCGGAAGTGCAGCACACGGCCGACTCGTACAGTCCGGGTGAAACTTCATTGTTACAGCTGAGGAGGATCACAGTGCAGCGCTTTGCCGGACGTTGTGAAGGACAGCCATCATGGAGCCGGCCTGCCGAAAAGACAAACAGAAGCAGAAGGAGACGCCGAACCGAGCGGACAAGGCCCGGCAGAGATCCGCTCAGCAGGAGCTGAAGCAGCGGCAGAGAGCGGAGATCTACGCCCTGAACAAGGTGATGACAGAACTGGAGCAGCAGCAGTTCGAAGCCTTCTGCAAGCAGATGCAATCGCAGGCAGAGTGAGGGGCGCCAGGGGTCACGATTATAACGGAAGAGAAGGATCAAGTCAACGTCCAGCACCCAAACTCAATCAAAGCAGCTGTTCCATTAAgggcataaaaacaaaaaggctaaTTCCCCTAAAGTATGAAGTTCACAATCTTTCTAAATCTTCTTGTGACCGAGTCTGGGTTAATATTCCTGCTACACACATTTGGAAGCCTATATGATGCTCGGGTTTGGGGGAAGAAAACCAATAATAATTTCCACCTCATTGGCGTGTCTTACACACAGGAAGGGCTGAGCTAGTATTACTCAATTAGTTGACCTACTGGAAGAACATACCAAGGACTAAGTACAGATAACAACCTCAGAGGTGAACGTGCTTCTGGTTCCAGTTCAGACCTGTCAGCAGACCAGTGTGGCCCTGACCTGTGCCACAGAGAATCTCGTTTCCTTCATGTAACCCTGCAGAGAAATCTGTCTGCTGGATAAGACTGAAACGAGTGAATGCTCAGTGGCTGAAGACGTGCTACAGTCTGAAATCTACTGGTCATTATGGACACATATGGTGTCACTGTTTCAGAGTGTTAGATTAGGGTTAGATTTGTAttagaagaattaaaaaaaaaaaacagactggtGCTATGAAgtgaaatgtattctttgtttacatttaatggTAAAAGTGGCATAATGGTAATCATAAAGTATTAATGGCATTGTATTCGTTTTTATACCATTTAGATTGACCTGTCCTGTATCCAGGTctcattataatgtaattagGCCAAGGTATTctctcctgtgtgtttgttgtgttttggccacaatttacaaaataccaAATTCAGAATTACCAGAGGTGTCATTTTTGAGTAAAGTTTGTAACATTATCAAATGACGTGTGTGTCTAATGCATTAACCAATCCTTTAGATTTCGTCATGAGAAGCTGCTAGTCTGCTAGTTGGCTTTGATCTTTTAAGCAAATcataagttttgtttttcaaagtctGTTGGTCTGGAATCATCAAAATGTAACCTGCAGTTTAGTTCACATTATTGACCGTGCGTTCTGAATTAAAAGTAAcatatgtgtgagagagaagtGAACTACAAATGTCAAGGTCAACCTGTAGTGTAAATCAACTGTAAACTCAAGATCACATTATGTTGTGTTCATTaggttcagtttatttttttcatttcatattccaTTTCCCATTCCCTTAGATGTAttcctggtttctgttccagtcTTTTTAATTGGCTCAATTTTGATTTTAGAACATGGGTTTTGTAagccaaaaatacattttatcaaaCAAACAAGTGCTGTTGGCAGGTTGTGTATTTATACTGAAGTGTGCGTGTGTTTCCCATTTTTGGCAGTAGAAGGAAAATTAGGTTTTGAAGATTGGCTTTTTTAATCACGAGTAGATTGGAGCCGTTCGATGAAACAGTTTCTGTATTAGATTTGCTGTGAATGCTGCGTTTCCAGTTCTGTAACGAATGCCAATATGCAATTGAATATTAATGTAGAGGCTTatgaaaactttattttattgtaatggaGTATGGGGGTGAAAACccatgtgaaatattaataactATGAACTATTAAGTTATGGCTGTCTTTTGAGCATtcaatttttgaaaaacaaaaacacatatatatgcaaaaaCCAACAAAAGCCTTAGGATATAAACATGTAGCTGCTGCAGCAGTCACAGCTGTAAGcttattttaatacatctttaaaaatacaatactgttgTGCTCTAGGACAATGTATTCAATGATTGGTCCGAAAGGTCTtgttccatttaaaatgtgcgggattgtatttaatttaataaatgtcatGGCTTGAATAGTGTTATGTCTCTTGTCTTGTTTATCCCATGGGTTGAATTCCATGCTCTATCCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150903 lncRNA downstream 258392 1225719 ~ 1228159 (-) True G120431
TU150863 lncRNA downstream 499327 985403 ~ 987224 (-) True G120399
TU150787 lncRNA downstream 796593 686944 ~ 689958 (-) True G120334
TU150772 lncRNA downstream 1065626 420588 ~ 420925 (-) True G120320
TU151001 lncRNA upstream 383646 1874213 ~ 1876061 (-) True G120513
TU151021 lncRNA upstream 441686 1932253 ~ 1975025 (-) True G120527
TU151027 lncRNA upstream 497802 1988369 ~ 1988627 (-) True G120533
TU151073 lncRNA upstream 502040 1992607 ~ 1992897 (-) True G120571
TU151074 lncRNA upstream 502766 1993333 ~ 1993623 (-) True G120572
AMCG00002042 mRNA downstream 38795 1441179 ~ 1447756 (-) True AMCG00002042
AMCG00002043 mRNA downstream 55867 1420067 ~ 1430684 (-) True AMCG00002043
AMCG00002037 mRNA downstream 108621 1373743 ~ 1377930 (-) True AMCG00002037
AMCG00002035 mRNA downstream 135793 1329547 ~ 1350758 (-) True AMCG00002035
AMCG00002036 mRNA downstream 160702 1319995 ~ 1325849 (-) True AMCG00002036
AMCG00002049 mRNA upstream 328173 1818740 ~ 1821514 (-) True AMCG00002049
AMCG00002055 mRNA upstream 519906 2010473 ~ 2012433 (-) True AMCG00002055
AMCG00002057 mRNA upstream 594862 2085429 ~ 2119334 (-) True AMCG00002057
AMCG00002056 mRNA upstream 630774 2121341 ~ 2127768 (-) True AMCG00002056
AMCG00002058 mRNA upstream 670977 2161544 ~ 2161834 (-) True AMCG00002058
TU151271 other upstream 1430685 2921252 ~ 2923221 (-) False AMCG00002085
TU151301 other upstream 1504941 2995508 ~ 3004917 (-) True G120748
TU151364 other upstream 1622875 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 2223300 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 2293669 3784236 ~ 3786544 (-) True G120927

Expression Profile