RNA id: AMCG00002049


Basic Information

Item Value
RNA id AMCG00002049
length 1248
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00002049
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 1818740 ~ 1821514 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCGGACTATTGGGGGTTGCGGCGAGTCTGGCAGTGTGCAAGATCATGTTCAATCTCTTCACGTTGCCCAATATCAGCACCCCCTTCAACCCTGTGGCCTGCTGCTGCAAATGCCTGCTGATGTTCACAGACCTCGTCCAGGCAGtgttCCTAGCGTTGCTCCTCCTGGCTGAGCCCGGGATGCTTAATTTAGCATTGCCCAGTGATGTCATCGCCCTGCGCTTCCTGTTGTTCCAGAGCCACGCCTATGGggtggtgctgctgctggcCACACCCCTGATCGCCATAGAGGTGGCTTGCAGGCTGATCCAGCCCCTCCCACTCTATGACAAGCCACACCCAGAAGACACAAAAGTGGGATGTACAGAGTGCAGTGGAGAAATACGTAGCAGGATCATCATGGAGATATTAATGCTATTCCCGGGTTTCCTGTCCTGCCTAATGGTGTGGACCGTGGCTGTGGACATTGCGGACCAGCAGTGGAGGCTGGAGGAGGACCAGCTTTTGATCTGCCTAGACCTGGAGGGTTCACTGTTGCTCTGCCTCCCCAGTCTGCTCACGGTGATCCTGCAACCCCTGGCTGACTCATCCCTGCTGCGACTGGCTCTCGTTTTGTACCTCGTGTTCGCAGCGAGCGTCTACATGATCAGGGCGCGACTCGCAGGCCAGGGGGCAGCACCGACGGACCCCCAGAGcgacagggagagaggagagacaggcGGGTGCATGCAGGCCTTCGCACACCACATCCACCACACAATGGCGCCGCAGCCAGGACACCCCACGGGAGCCATCGCTAACTCGCTAACCCCCGACACGGCACAGTCCGCTGCAATCGAGAGGGCCACTAAAAAAATGCTCACACTTCTCCTAACGCACCCCAGTCCCAACACGACAAAACGGCACTACCAATGCCATTGCTGCTCTACCAAATGCCATTTCGAAAATGACTTTGAGACCGTCATGCAACAGAAGCCCtcgacacacacagacacaccccaCATGAGCACTGTGTATTTAGCCACACCAGACTTGGATGGGCCACAAGCCAACACCCCTGCCCCCAGAGGGAGAGTTTCCCTGCCAGCCGGGGTGCTCAAGGGGCTGCTGTGTGGTATCACTTTATACCTGTTCCCCCCTGGCCTGGCTGTCCACACCTCCCTGATCTGGGGTGTCGAGACTTTGACCACCTGGGGTCTGAGACACATACTGAAAACCCCGAAAGAGCCGAGGGGTCGAGCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150960 lncRNA downstream 290655 1467939 ~ 1528085 (-) True G120477
TU150962 lncRNA downstream 328173 1486551 ~ 1490567 (-) False AMCG00002044
TU150963 lncRNA downstream 328173 1486551 ~ 1490567 (-) True AMCG00002044
TU150903 lncRNA downstream 590581 1225719 ~ 1228159 (-) True G120431
TU150863 lncRNA downstream 831516 985403 ~ 987224 (-) True G120399
TU151001 lncRNA upstream 52699 1874213 ~ 1876061 (-) True G120513
TU151021 lncRNA upstream 110739 1932253 ~ 1975025 (-) True G120527
TU151027 lncRNA upstream 166855 1988369 ~ 1988627 (-) True G120533
TU151073 lncRNA upstream 171093 1992607 ~ 1992897 (-) True G120571
TU151074 lncRNA upstream 171819 1993333 ~ 1993623 (-) True G120572
AMCG00002044 mRNA downstream 328173 1486604 ~ 1490567 (-) False AMCG00002044
AMCG00002042 mRNA downstream 370984 1441179 ~ 1447756 (-) True AMCG00002042
AMCG00002043 mRNA downstream 388056 1420067 ~ 1430684 (-) True AMCG00002043
AMCG00002037 mRNA downstream 440810 1373743 ~ 1377930 (-) True AMCG00002037
AMCG00002035 mRNA downstream 467982 1329547 ~ 1350758 (-) True AMCG00002035
AMCG00002055 mRNA upstream 188959 2010473 ~ 2012433 (-) True AMCG00002055
AMCG00002057 mRNA upstream 263915 2085429 ~ 2119334 (-) True AMCG00002057
AMCG00002056 mRNA upstream 299827 2121341 ~ 2127768 (-) True AMCG00002056
AMCG00002058 mRNA upstream 340030 2161544 ~ 2161834 (-) True AMCG00002058
AMCG00002061 mRNA upstream 353966 2175480 ~ 2210300 (-) True AMCG00002061
TU151271 other upstream 1099738 2921252 ~ 2923221 (-) False AMCG00002085
TU151301 other upstream 1173994 2995508 ~ 3004917 (-) True G120748
TU151364 other upstream 1291928 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 1892353 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 1962722 3784236 ~ 3786544 (-) True G120927

Expression Profile