RNA id: AMCG00002057


Basic Information

Item Value
RNA id AMCG00002057
length 5061
RNA type mRNA
GC content 0.59
exon number 27
gene id AMCG00002057
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2085429 ~ 2119334 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTGATACAATCTTATTTTTCCATGATGCAATTGGTATATTTGGTATAGGTGTATTGAACCCGTAGGAAACCCCAGAGAAATGTTAAACCATtataaaagtgtaaaatgtcTATGGTAAATTTACCAGAGTAAACTAGTGTAAGAGTAAATATCtggaaagtaaataaaaaacaaacaaacaaggtattaaaatgatttaaaagcaCTGATCTAGATGTTATCCAGTGCTGGGCTTCAACGCAGGTCCATCACTTCCATTCGTTCTTTAAAGCATCTACCCGCCTCTGCTGGCCGCACAGCCAGCTCCGGACCCCGCCGCCTCGGCACGGAGCTCTCCCGCCCCCCGACCCTCCTGGGGTTTGACCAGCGGCCCTGGCGGGACCATGGCGCACTCCGGCCTGGAGCTGCTGGCTCGATGACCCATTCAACCAGCGAGAAGAGAAAGTCGAGGATGCAACTCGTTTACCGGGGCAGAGCCCCGGCGCTGGACCGCTACATCACACCACCCACCCCCGAGCAAAGCAAGGAAACGGCCCTACCGGAAACTGGGGGGATGAGACCCGGGAAGACGCGGAGACACGGGCACCTCTGCAGGGGAAGGAGCTCGGCTACAGTCCCGCATCCATCCTCTCGGTGCGGATTACATCCACAAGGCTGTGTCGGACATTTTGAAGGAAGCAGACGTCTTCTTTTTCTAGGACAATCGGCCACCGTAGTCTAACTTACAGAAAGTTAGACAGATCTGCGGCCAGACGCTTGTAAACAGACCCTTTCATGCAGACGTCGGAAGTTTTCTCGCTCGGCTCCGGGGAGACTTGGTGCCAGTGACCGCTGCCTGGCCGGAGCACCGGACCGTGAGACGCCTCGCATCCAGTCCTCTCCGCCTCCAGCGACATCTTTAAAGCCGAGCCGCTGCCGCGGTGTGCGCACCGGGCTGGATGAGCGGAGTTAACGGGCACGGAGTCCGCAGAGCCGTGTCTGTATTGATCTCATTTACGCCACACACCACTTACGGAGTTTTGAAAACATCTATCGGAAATGCAACACGTACATTACACCCTCTTAAGTGACACCatggtacaaaaaaaaacattgtacctCGATATTGTGGAGACTTGTTGTTATATTGTCGCTTGGTTTGCACTGAGCGCTGATTTTGACATGTAATGCATGAAAACTAACAGGATGGGCATTTTGAATAATTGATGAAACCCCGTCTTTCATCTTCAGCTttgatattttcatatttggcCTTCTTGGATATAACATTTTTTCAGATCTGCTTGAGTTACTTGGGCGGATCATTATAATCGATGGGAGAATTTTTCACCATGGATTGGCCGTAGGAGGCACCCGTCTGGAAGGGTTTCCAAAACTCTGGACAACCGCACAACATGGAGCAACAAGAGGAGAGGGCCGAGCTCGAGGACATCGTGCTGCGGCTGAGGGCCGATGGACTGGACCCCGGGGCCACAGCGGATGAGCGTCTCCGTCACCTGTGGCGCCTGTTCCTGCGCAGCGAGGGCAGCCTGGTGTCCGTCACTCAGGACCTGCAGACCCTGCGCACACAGCAGGCCACCGAGATGAAGGAGGTGGAGAACTATGTAGACCACATCCGCAACCTCTCGGAGGAGCGGGAGTCCCTGACGGCCGAGTACGAGCGGGAGAACGAGCAGCTTCGCCTGGACATGCAGCAGCTCCGCATCCATCAAGAGGCCCAGCTCAAGGAGGTGGAGGAGATGCTGGAGCAGGAGGGCCTGGGTGAGATCACGCACAGCAGCCCCAGTGAGCAGATCGCCTACCTGCTGGTGGAGAGGGCCACCCTGTTGGAGAAGCTGGAGGCGGCCGAGAGGAAGCTGGACACGCAGAGCCTCACTGGCAGCCTGAGAGAGGTGCATCTGCAGGAGGAGCTGGACCAGATCCGCCAGACCCTGGAGGAGGAGCTCCGGCAGCAGAGGGAGTCCATGCAACGAACCAAAGAGACCATGAACAAGGATTTGCAGTCCCCAGGCCAGAGTCCCTGGAAGAAGCTCTTTGGAGTTCGCAAGGCAGCACAGAGCACACGCGATGATCCCTCCGCCCACTGGGACGAGCTGAGCGGGGAGCGTCTGGAGAGGCAGCGCCTGGAGCGGGACTTGGACGAGGCGTCTCGCAGGCTGGCCATGGCGCACGAGGAGATCCGCCGACTCAGCGATGAGCTGGACTCTGCCAGGAAGACGCAGGGCCACAGGGAACCACAGCTGGAGAGAGCACGCCAGGAGGTGGAGGAGATTGatctCTTGGACCTCCAGAAAGCCAAAGAACACAACGAGCGGCTGGACAGAGAAATACTGGCCCTGAGGAACCGAGTGCGCTCCCTGGACTCTGAGAGGAAAACATTGCTGGAAATGGATTCAGAGGACAAGGCCTGCCGCCTGCGGGAGCTGGAGCGGCGCCTGCGGAAGCTGCAGCAAGAGCACGAGGAGCTGGTGGAGAGGAATGAGGAGCTGGAGTCGCTGCTGGGAGAGGCGCAGAACCAGAGCAAGGAGGACCGGGACCGCTACGAGTGCGAGGCCGAGGGCCTGCACAGAAAGGTGAAACGCTTGGAGTCCGAGCTGACCAGGCGGAGTCAGAGCACGCAGGAGCCCCCACGGACGGGTGGAGATCAGCCACACACCCCTGGATCTGATCCAGACGTCTATCTTCAGCAGACGCAGAGCAGCAGCCAGGAAAGGGTGGCCGTGCTGGAGGGCCGTCTGATGGAGGAGACGGAGTGGCGGCAGCAGCTGGAGGAGCTGCAGAGGACCCTGGATGAGCTGAGGAGGTTACGGATGGAGGCTCAGACGCTGAGAGCCGGCCTGCAGGAAGGCAATTCTGTGTGTGAGCTGGATCGTGCCAAGAAACGGGTCGACAGTGACCTGGAGATGCAGAGCGCCTCTGCCCGAAGAGGCCAGGAGGACCTGAGGGAGACCAGGGCCCGCCTGGCAGAGCTCAGTGCACAAACTGGGGCGCTGAGGGCTGAGCTCGGCAACCTGGAGCGCGAGCGCAAAGCACTGCGggggGAGGTGGCGGAGGGCCGGGCCCAGCTGGCCACCCTGCAGAGGCAGCTGAACGACAGCGCCCAGGAGAGGCTGCGGCTTCAGGAGGAGAGGCAACGCCTGGGCCTGGAGCTACAGTGTGTGAAGGAGCAGCTGCAGAGCACCAGGCAGGAGGGCCAGAGACtgaggcaggccagccaggaccCCAGCCCGGCCGCATCCGACAGGCCCAAGGATGAGTGCCTCAGCCAGCTGGTGTCTCTTAAAGTGGAGATGGGCCGGCTCCAGACCACCCTGGAGGAAGAGCGCTTACTGGCCGGTCAGCACCAGCTGGCACTGCAGGCCCAGATCAGTGAGGCTCAGAGCCGGACCAAGAAGGGCGAGGAGTGCCGGCTGCTGCGTCAGGACGTGCAGCGGGTCCAGAACCTGTTCACCTCGGCCGAGAGGGAGCTGCGCTACGAGAGAGAGAAGAACCTGGACCTGAAGAGACACAATGCCCTGCTGGACCAGGAGAAAGTCAAGGCTGGCGTGGAGCTGAAGCAGGCCCAGACCAGGCTGGCACAACTGGAGCAGAGCCAGGCGGCGCTGGCGGGTGAGCTGGAGCGAGCACAGGATAGGGCCCGCGAGCTGGAGCTGGACCTGGCCCGCAGCAGCCAGAGCAGGCAGGCCCAGCACAGCCTGCAGGAGGAGCTGAGCGTCGAGAGAGCCCGGCTCCTCAGCACCGACAAGAAGGTGCTGGAGTTGCAGCAGCAGTTGAAGAGCGCAGTGCACCAGTTGCGCCTGGAAGAGACGCGGGCCGGGGAGACGGAGCGCCTGCAGAGGGACAGCAGGGACATGTCGGACACGCTGGCGGGGCTCAGGGCCAAGCTGCATGAGGAGCAGCTCCACAGGAAGCTGCTGGAACAGAGGgaggaggagctgcagcagcaggtCCGGGCCCTGCGGGAGAAGGAGGCTGCTCTGGGCCGGGCCGGTGCCGAGCTGAGGCACCGGCTGCAGCAGCAGGACACGCGTGTGGGCGTGCTGGAGGTGGAGTGCAGCGCGGCCAGAGACGAGCAGCTTCACGGCCAGAAGACCAACCAGAGGCTCTCGGAGCAGCTGCTGTCGAGCCAACAGGAGTTGGAGAGACTGCAGGAAGAGCTTCAGCAGGTGCTGCAGCAGCTCGATTCGCAAATCCGGAAGTACAACGAGAAGCAGTCGCAGTACAAGACCAAGTTACGGAAAGCCAAACAGGTTTTTATGAAGGAGACCACGGACAGAGACTGCCGGATTCAAAAGCTGGAGAACGACCTCGCTCTGGCCACGAGCCTGGCTGAGAAGGAGAAGTGCTGGATCAAGCAGGTCACTGAGGAAAACGAGAAGCTGCTCACAGAGAAACGCGATCTGTTGAAGAAgctgagtgaggaggaggagatcgGCCAAGGCAGCCTGCGGACTGCCTCCACCATCCAGCACAGGGTCAACTTCTTAGAGGAGGAGAACAGGCAGCTGCAGGACAGGACCTTGCAGCTGTGCAGCCAGGTGGCTGCTCTGGAGCGCGCGCTGAGGAACGTGCAGTCGGTGCGCAGCCTGGAGgaactaaaaaaaatatttccttctGAAAGCCTTCTCCTGAATGGCAGTGTTCTTCGGTCTACAAGCCCAAGTCTTGGAGACACACTCGGCATTCTGGACGCCATCCGGAGGGTCAAAGTGGGCGAACACCCCGAGGGCATCCGGTCCTCTTTCGCCGTGCCCCCCCGCTCGGCGCCTTCTGAGATCGGCTACCTGAATGTGAGTTCCCCAGCGGGCCCCGCCAGACCCCAGGACCCCGACGAGAGCCTGAGTCTGGGCAGCGATGAAGTGTGAGGTGCACCACAGGGTACGGGCCAAAGGCCAGCGCACAGTCCTGACCGGATCCTGGACGGCAGCACATGGCCTTTCCCAGAACAATGTAGCGTTTCAGTCAGGATGTGAAAATCTGTCTGATGATGAACATTCTCCCcccacttttttgttttgcgaTTCtgccattcattcatttgttcaCCATTAGATtggct

Function

GO:

id name namespace
GO:0006935 chemotaxis biological_process
GO:0042221 response to chemical biological_process
GO:0097485 neuron projection guidance biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151076 lncRNA downstream 89362 1995768 ~ 1996067 (-) True G120574
TU151075 lncRNA downstream 91406 1993728 ~ 1994023 (-) True G120573
TU151074 lncRNA downstream 91806 1993333 ~ 1993623 (-) True G120572
TU151073 lncRNA downstream 92532 1992607 ~ 1992897 (-) True G120571
TU151027 lncRNA downstream 96802 1988369 ~ 1988627 (-) True G120533
TU151094 lncRNA upstream 43307 2162641 ~ 2162856 (-) True G120589
TU151109 lncRNA upstream 104009 2223343 ~ 2224405 (-) True G120601
TU151217 lncRNA upstream 576247 2695581 ~ 2695977 (-) True G120683
TU151216 lncRNA upstream 576729 2696063 ~ 2696387 (-) False G120683
TU151243 lncRNA upstream 726048 2845382 ~ 2847937 (-) True AMCG00002078
AMCG00002055 mRNA downstream 72996 2010473 ~ 2012433 (-) True AMCG00002055
AMCG00002049 mRNA downstream 263915 1818740 ~ 1821514 (-) True AMCG00002049
AMCG00002044 mRNA downstream 594862 1486604 ~ 1490567 (-) False AMCG00002044
AMCG00002042 mRNA downstream 637673 1441179 ~ 1447756 (-) True AMCG00002042
AMCG00002043 mRNA downstream 654745 1420067 ~ 1430684 (-) True AMCG00002043
AMCG00002056 mRNA upstream 2007 2121341 ~ 2127768 (-) True AMCG00002056
AMCG00002058 mRNA upstream 42210 2161544 ~ 2161834 (-) True AMCG00002058
AMCG00002061 mRNA upstream 56146 2175480 ~ 2210300 (-) True AMCG00002061
AMCG00002063 mRNA upstream 121074 2240408 ~ 2243317 (-) True AMCG00002063
AMCG00002062 mRNA upstream 138477 2257811 ~ 2265536 (-) True AMCG00002062
TU151271 other upstream 801918 2921252 ~ 2923221 (-) False AMCG00002085
TU151301 other upstream 876174 2995508 ~ 3004917 (-) True G120748
TU151364 other upstream 994108 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 1594533 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 1664902 3784236 ~ 3786544 (-) True G120927

Expression Profile