RNA id: AMCG00002063


Basic Information

Item Value
RNA id AMCG00002063
length 783
RNA type mRNA
GC content 0.60
exon number 7
gene id AMCG00002063
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2240408 ~ 2243317 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTAAGTTTGTGGTCCTTGCGTTTCTTGTTGCTGGCGCGTACGGCTGTGGGCTGCCCACCTTCCCGCCGGTGGTGACCAGAGTCGTAGGCGGAGTGGACGCCAGACCCCACAGCTGGCCCTGGCAGATCTCTCTCCAGTATTCGAGCGGTGGCAACTGGTATCACACTTGTGGTGGCACCCTGATCGCTCGCAACTGGGTCCTCACTGCTGCTCACTGCATCAGTCGCAACACTTACAGAGTGGTTTTGGGCAAGCACAACCTGAAGCAGAATGAGGCTGGATCTCTCGCCATCTCTGCTGGAAAGATCATCGTGCATGAACAGTGGGACTCTGCCAGAATCCGTAACGACATCGCCCTGGTGAAGCTCCAGAGCGCCGTGACCGTCAGCAACTCCATCATGCCTGCTTGTCTTCCCGCCTCCGGGACAATCCTGCCCAACAATGCGCCTTGCTACGTCACCGGCTGGGGCCGCCTGTGGACGAACGGTCCCCTGGCTGACAACCTGCAGCAGGCCCTCCTCCCCGTGGTGGACTATGCCACCTGCTCTCGGAGCGACTGGTGGGGCAGCCTGGTGACCCAGAGCATGGTGTGCGCCGGAGGAGACGGACAGTTGTCCAGCTGCAATGGAGACTCTGGTGGCCCTCTGAACTACCAGGCTAGAGACGGGTCCTGGGAGGTCCATGGTGTGGTGAGCTtcggctccagtctgggctgcAACTATTACAAGAAGCCCTCAGTCTTCACCCGCGTCAGCGCCTACATAGGCTGGATCAATAAC

Function

GO: NA

KEGG:

id description
K01346 CELA2; pancreatic elastase II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151109 lncRNA downstream 16003 2223343 ~ 2224405 (-) True G120601
TU151094 lncRNA downstream 77552 2162641 ~ 2162856 (-) True G120589
TU151076 lncRNA downstream 244341 1995768 ~ 1996067 (-) True G120574
TU151075 lncRNA downstream 246385 1993728 ~ 1994023 (-) True G120573
TU151074 lncRNA downstream 246785 1993333 ~ 1993623 (-) True G120572
TU151217 lncRNA upstream 452264 2695581 ~ 2695977 (-) True G120683
TU151216 lncRNA upstream 452746 2696063 ~ 2696387 (-) False G120683
TU151243 lncRNA upstream 602065 2845382 ~ 2847937 (-) True AMCG00002078
TU151291 lncRNA upstream 709956 2953273 ~ 2953482 (-) True G120743
TU151294 lncRNA upstream 742256 2985573 ~ 2986779 (-) True G120746
AMCG00002061 mRNA downstream 30108 2175480 ~ 2210300 (-) True AMCG00002061
AMCG00002058 mRNA downstream 78574 2161544 ~ 2161834 (-) True AMCG00002058
AMCG00002056 mRNA downstream 112640 2121341 ~ 2127768 (-) True AMCG00002056
AMCG00002057 mRNA downstream 121074 2085429 ~ 2119334 (-) True AMCG00002057
AMCG00002055 mRNA downstream 227975 2010473 ~ 2012433 (-) True AMCG00002055
AMCG00002062 mRNA upstream 14494 2257811 ~ 2265536 (-) True AMCG00002062
AMCG00002064 mRNA upstream 39588 2282905 ~ 2295720 (-) True AMCG00002064
AMCG00002065 mRNA upstream 67477 2310794 ~ 2319970 (-) True AMCG00002065
AMCG00002066 mRNA upstream 224938 2468255 ~ 2468604 (-) True AMCG00002066
AMCG00002067 mRNA upstream 279433 2522750 ~ 2532760 (-) True AMCG00002067
TU151271 other upstream 677935 2921252 ~ 2923221 (-) False AMCG00002085
TU151301 other upstream 752191 2995508 ~ 3004917 (-) True G120748
TU151364 other upstream 870125 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 1470550 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 1540919 3784236 ~ 3786544 (-) True G120927

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000339_03405806_03412956.mRNA False 789 mRNA 0.50 7 CI01000339 3405806 ~ 3412956 (-)