RNA id: AMCG00002064


Basic Information

Item Value
RNA id AMCG00002064
length 6991
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00002064
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2282905 ~ 2295720 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCTGGTTTCTCCCCCTCGCTGAGCGCAGACTGGTCAAAGCTGTTGTGCTTCTCAATTCCTCTGATccctaccccccccccaccaacaccctgctccctccttcctcttccCCCTCCCTGACCAATCCAGACTCGGACAGCCTCTCGAGCCCCACCCGCCTCAGCCTGTCGGACGGCGAGGAGCAGCTGGACCGCCTCCAGCAGGTGGAGCTGGCCCGGACCACGCCCATGTCCCGGTGGAGGGCGGGGACGGTGCAGGCCTGGCTGGAGGTCATCATGGCACTGCCCATGTACATCAGAGCCTGCGCCGACAACGTCAAGAGCGGGAAGGTGCTGCTGAGCCTGACGGATGAGGACTTGGAGCTGGGTCTGGGGGTGAGCAGCTCTATGCACCGCAGGAAGCTCCGCCTGGCCATCGAGGACTACCGGGACGCCGAGGGAGGCCGAGGGCTCTCCAAGGCGGCGGAGATGGACCACCATTGGGTGGCCAAGGCGTGGCTGAGCGACGTGGGTCTGCCCCAGTACTCCCAGGCCTTCCACGCCCACCTGGTGGACGGGCGCATGCTGAACTCCCTGACCCGCCGTGACTTGGAGAAGTACCTCGGCGTCACCAAGAAGTTCCACCAGGTCAGCCTGCTGCTGGCCATTGAGCTCCTGCACACGCTCAGCTTCGACAAGGAGGCTCTGCAGGCCCGGCGGGCCCACTGTGAACACCAGAACACTGACCCAGTGGTGTGGACCAGCCAGCGAGTGATGAAGTGGGAGTACGCCGACAGTCTGCAGAACAGCGGGGTCCACGGCGCCGTGCTGGTGATGGAGCCTGCTTTCAACACGGACGCCATGGCCACGGCACTGGGTATCCCCAGCAACAAGCACATCCTCCGCCGGCACCTCAGTGAGGAGATGAAGGCCGTCGTCAACTCTGCCAGGTTGGGTCTGCAGCAGGATTTTGAGAGGCTGGGCACCCCCACCATCGTGCGGCAGGGCACCCTGGGTCGGCCCTGCGGCTCCGTGAGCCGGCAGACGGAGGAGGATCACTCCCTGAAGAGGCGTGCGTGCAAGCCTCCCCTGGGATTCAACCCCAAAGCCTACAGTGGGAGGGACCTGGGTCTTCACGGCAGCTGCGGCTCCCTCCCCCGAGAGGGACGCGACGAGTCGGGGGGCCGCGTGGAGGGGAGCCCCGCGCACAGCTATTCGGGCATAGAGGTCACCAACGTTTAACCGCGTCGCCGGATCTGTGCCGTGTCCGCTGCGCCCGCGACGGAGAAGGCTGGGAACTCAAGTCCTTATGATGGGCCGGGTGTCTCCGGGTTTGCTGCGCACCGGCTGAGGAGACCCTCTCGAATGTCTTTTCAGAAAACTCCCTCTGGATCCGTCCAGGATCAGATCTCCCTCCCACTGGTCTGGTGTGAGGATCGCTCTGGAGTCTGGAGAGTCTTTTACGCTTGTGTGCAACGCAGCCGTCTTTTCTATGCTCCCTCCCGGACCATCGCACAGGAGCGGCCTTCCACAGAGCCGTTTTATTCAGGAAGCTGTTTTCGCTCATTTCTCTGACCTctgactttgtttttatttattttccttcattacAGGGGATAAGCATTTGAACCAATAACAAGACAAACTTGAGTGGCATAAACATCGAAAAGGTGCTGTTCAAACGCTGAAGAGACGTGGTTTAGAGAGCGTCCACATCCTCTGTAGTTCGTAGCAAAGACAGTATTGTTttacctttttccttttttcttccagtCTTGCTTCAGATTGTGTGACAAGACGCATGTGACGGTGTGCTGAACACACGAAGAGCCTGGCAGTGCTCTACGCTGCCCATTAAACACGGCAAAGGACATTGCTTGAAATGTTTAACCTCACCGCAGTCTTAGACGAGTTTAACAGCTAGggatctttttgtttttgttgtcagcATTGGATCTGAAATAAAGCTAATGATGTAGGTTttcatagaaagaaaaataaatcaatctctTCCCTTTCAGTTTGTTATATCACACGCCATAATACTTAACAATAGAATCTAAAACAACGCAGGAGATTCTATAGATTTTATATAGACACCTCCAGAGTCCGTTCAGAACCGAATTTTATAACCCGGACTTTATCACTCGGTGAATTGACAGTGTGCGGGGGGGTGTGGGTGTTCAGCAAATGCATTTGTTCCTGCTATTTGTAAAAGTTCACCAGCTTGCCATGACTGAATCCCATTGAACTGTGTCTATGAAGCCAATGCAGATTGGCCGCCTCTTTCCAGGCCTGTGTGACATCCTAACGCACTGCGAGAGTGAGATCAGACGCTTCTTGTCCGAGTGTTTTTGCAGCCCCACTTCTGCTCCCTCTATTTATGTTGTTGCTAACCTCCTGACTGCGTCCCGTCTCCCGTCTCCCGTCTCCCGTCTCCTGACCCAGCTTTACACTGTGTGCCTGATTCTctgcagcttttgtttttctttctgtgctttttcaTCCATGCTAACTAATTCCCCCCCAGACATCTCATACACTGACCTGAACCCTCACGGCAAAGTATTAGCATGCTCAGTTAAGCACCATGACCAGTTTCCCTCCGTTGGGAGTCCCAACAGCATCGGCCTCCAGCGCTGGTCCCAGAGAGCCCCAGTCTGACAGGCTTCATCAAGGCTCTTCAGTGATTGGTTCAATTCTGTAAGTGAGAGCTTTACTGGAAGGGAAAGTGAAAGACcctgtagctctccaggaccagcgCTAGAGACCCCGGCCAGTGTAGCTGTAACAGTAACGGGCTCTGCTCAGCAGTGCCGGTTAGGCCCAAGAGTCAAGCCATCACTGCGTCCGCTGGGTTTCAGCACCGGCCAGATGTCCACAGCAGAATTGTCGGAGCCGTTGGTTGGATTCTACGACATCCTGGGTTTCCTTGCCTGGAGAAGTGCCTCCCCCCTCAGTCCTGTttaacacatgcacactcaGTTACACATCGCTTGCTATTTGCTTAGCCTTGGGCCACATCGGGAATggctttttaaatggtttaactAGGCCTACGATTGGACCGATGGCCGTCGCATTGTGATGATTGTGGCTCAGCAGGTGAGCGCAGCGTGTTGACTGAATCAGTCTTGCTTTTGttgcttatttattgattaagtTCAGTCCCGTAAATGGAGCTCCTCAActatattgtgatttttttatgttttgctttacagTAGCAGCTCAAACATGTTCAAGCCAGGCCAGACAGGTCATGTGACCATTGTTGGAGAACACCACCCTGCACCACCCTGATGCTAGAGCGACTTTATCTTTCGTTTCACCGCGGCTGTCTGTGGTCAGAGGCAAAACCGCTTCATCTACAGTAATTGCAGCAATAATTGGTTCAGATCCCTCAGAGctacaatgaaatgaaaatcaagATCATCTTGTTTGAGCCCCCCGGTCTAGATTAGCTTGATCATCACGAGAGAATATTTTGAACTCAAGGCCACATGTAACTCCTATTAATAAtgtgaaggaaaataatttgaattcagGCTGTTATTAAAACCTTGTGTAGACGGGTCTGTCGCCAACCCTCTGGCCTTCAGGGTCACCAGGTCAGCATTTCCTGTGCGCTTTGCTGTGCAAATCAATACCAGACTTTCTGTATGTGCAGAATCAGATTCCTGAGCATGAGGGGGGGATATAGCTGAAATGAGAGACGGGGCTGAAATTCTCCAGGACCTGGAAACTCTGTCTGCGCTGTTGTTGGCTGAAGAGGAGCAGCATTGCTCTGTACGGGCCTCGGTCAGAACGGACCGCCCAGGATTGTTACAGAGGAGCTCGAGTGTGTGAAGCATGCAAGTGAATTTGTCATGCCCCCCCCCAAATGTTTGTACAAAGTAATCATTTTAGAGATGACATTTAGTTCTCAGTTCCACTAGTTGCTGTTCAACCTGATTTAGGTCAAAAAAGTGGATCTCTCTTAAGTTCTTCGATGTTCTTCTCCGGTGTGtgtttgcagtaaaataaagtGCCCATACGGCACGCTTAACAGCCACCCAAACAGAAATCAGTTCCAAACTCTTGAGCAAAACAGTCTTGGCGCACAGAGAGACAACAGTGTCAGGTTTCTGCCTGCTCTGTGCCCAGATGACTTCACCCATGCTGTTGTGTCTGACTGTCTGAGTGGGATGCTGGGATTGATTAGCTACTGGCACCTAAGGAATGAGACGTGCGGCACAGGCTTTCTCTTGTTTCCCTTATATCGTTTCTGTTTTCAGACGATGACCACGCTCTGTGGGCGATGGCAGAGAGCAAAGCACTGTGTGACGACAGAGTAGAAACAGAGAGGAGGACTGGGGGCAAGGATGGCCCTTCTTTCCACACAAAGGCATCAAACGTTCTGGCAAACTATGTAGTCAGTGCCGTCTCTTTAGGATCCTTGGGGAAACGGCTGGATTAACGTCTCTGATGACTGATCTGCTAGCAGCTGGACAAGCCAAATGGAATGATAGTTCGTCCACTTTTATCTTCTCTCAGACGCATTTTCTATTTGTGGAGAGGGGATATAGATGCTCGCTGTGGTTGGTGTGTCTGAACAGCAAGGTCGGTGTGAATTGTAATCCCTGCAGTCCCCGATTCCTAAAGCATGGTCTGTGGTCCTGACGCATGCACAACCTCTGCTTACTTCCCATCGTGGCCGTGCCGTAATCTGTTCCCACTGTCTGCCCCCGGCCTCTGGGAAACGTGCACATGCCTGGCATTTTTCACAGCACATGGACAGCTAAAGATATCACGTCCTTCTTTCTTTTACCCCAGTCCCAGGAGATTAGATCTGGTGGAGTGTATTGCTGGTCAGCAGACtagatagatttatttatttatttatgtttcttatacCTAACTACAAGCCGGCAGAGGCAATGCCGGGTAACGAGGATATGgatggaaaatatttgtatcgtttgtgtaaactgtaagccaccctggataagggcgtctgccaaatAATAGATAGTAACTCAGCCTATCAGGAGACTCCTGAATCAAGGATGCTTGCTTGCCAGCTGTGAAAACCAAGACTGTCGTTTGTGGTTGCTGTCACTGGTCATGTACAGAGTGGTGAGATTCAAACGCCAGTCTTCAGGACTTCAAGATGTGGAGGTGAATCCAGGGTTTTTCTCTGGGGGGTACAGGTGTAGTTTTGTCATTCCTGGTGCATATAGATGCTCAGTCAGGATGCTGTTTTACACATAGACAGGTATTTGCATATTACCTTGTTGAGGGCAGGATGATTCTCAGATATGATGTTAATAATGGTTGGGTTATGCATTAGGGGCTTGCATTGTGTGCCACTTAAAGAAAGCATCCAAAGGTGGTCTGCTGCCCTGTCTTGACAGGAAATCCCCATTTGTCAACCAAATGAACACGcttctgtttttcacatgaCTGATCAAATCACACTGCAACACCCGCCTCCTCCACACGTCTGATAAGTGATTTCAACAGGTGGGTCTGTTGTCTCAAGATAACCCCCAGAGAAATGACGACAGAGTTACACAAGGAGTGCCCTATAAGAATCGGCACAGAACGGAGCCCTGCTGTGTCCCTCAACTTTGACTCAACATAGCTGAGACACAACAACAAGCACTGCACCGAGCAGACGCACACCTCAGAACCTGGTATCTTGGCCACGTGACCCTCATTTTAATGTGGCGCACCTGGGTAATAGTTAGGAAAGAGTAGGGAAAATCGTCCATAATCACTGGTAAATGTTTCAGGTTGATTCACAAGCAATCTCCAGGGGGGGACTGCACACATCTGCAGCATCACTTGTGGCAAATTAAGAACAGACTCCTAAATGTGTTGCGCTATATTCATAATGGCCGTGTTTATTCCAGCGATGCAGTCAGTAAGGCCTCGAGGGTCTACAGTGGTGCACAATGTCACCGGTTTCTCAGCTCATATGCTAACTAACCCATGTTGCAAAACAGAATGAAAGGTCTGGGCTCTGCTTGGCACCTAAGCAGTCACTGGGGCAGACCGCAATGAACAGCCCATTTGTGCAAGTTTGTGTATCATCATCCCTTACCTCTGTGTTGCCAACTAACACAAACGAGCTCTTTGTTGTCACATTTTGAACCAGGTTTAGGAATGAAATGTAACCCATTTGTGGCTACAATCTCATACTGACTGTGCCCTCGCTGTACTTATGTGCCATCCGGGCCTCTCCGCCCTGCTGGGTCAGATTTACCCAAGCACAAACATGTCTCAAAGACGTGACACCTCAAAAATCCCTCTGTCTGTGTAACAGCCAGATTGCATTACTGCATTTGATGCCGAGGGTCTTTCAAAAGATCAGGCGGCGCATATTGAAGAAAGCTGAAGAACCAGCGTCTGCCCATCCCATATGTGTGCTGCTTGGCATAAAATGTCTGGGAGACCCATTGTCATCAAAAGACTGACACACGGAGGGCTTCAAACAGAGGGACATAAACATCTGGACTCCTGGGAGACCTGCTGATGAACAGGAAAGAGAGAAGCCCAGAAGCagattctgaaatgaaatgtcATGACGGGCTCTGGCTACTGGCAAACATCATAAACCAAATAATCCAAAACTTTTTTACGACTTAAAGATTTCCTATAGTCCCTAAACTGGCTCGTAGACTAGGGAAGTAAAATGTGTCCATTTGGCAAACATCATCTCCCTCAACTaagtgattgttgttgtttttttaagcagtgAGGAAGTTCAAGTGTCTGCTTACATAAAGACCCCAGTTCAAACTGTTTGGCTTGGCGCTGACTGGCAGCCCGTGGTCCGGGGCGAGCCATCGACCTCTCTGTGTGCTGGGAGATTAGAGGCTCATTGAGAGTCTGCTGCAAATAACCCTCTGCCcccagcacacacacgcacacgcacacacacgcacacacgcacacgcgcgcacacacacacacacacacacgcacacgcacacacgcacgcgcacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151109 lncRNA downstream 58500 2223343 ~ 2224405 (-) True G120601
TU151094 lncRNA downstream 120049 2162641 ~ 2162856 (-) True G120589
TU151076 lncRNA downstream 286838 1995768 ~ 1996067 (-) True G120574
TU151075 lncRNA downstream 288882 1993728 ~ 1994023 (-) True G120573
TU151074 lncRNA downstream 289282 1993333 ~ 1993623 (-) True G120572
TU151217 lncRNA upstream 399861 2695581 ~ 2695977 (-) True G120683
TU151216 lncRNA upstream 400343 2696063 ~ 2696387 (-) False G120683
TU151243 lncRNA upstream 549662 2845382 ~ 2847937 (-) True AMCG00002078
TU151291 lncRNA upstream 657553 2953273 ~ 2953482 (-) True G120743
TU151294 lncRNA upstream 689853 2985573 ~ 2986779 (-) True G120746
AMCG00002062 mRNA downstream 17369 2257811 ~ 2265536 (-) True AMCG00002062
AMCG00002063 mRNA downstream 39588 2240408 ~ 2243317 (-) True AMCG00002063
AMCG00002061 mRNA downstream 72605 2175480 ~ 2210300 (-) True AMCG00002061
AMCG00002058 mRNA downstream 121071 2161544 ~ 2161834 (-) True AMCG00002058
AMCG00002056 mRNA downstream 155137 2121341 ~ 2127768 (-) True AMCG00002056
AMCG00002065 mRNA upstream 15074 2310794 ~ 2319970 (-) True AMCG00002065
AMCG00002066 mRNA upstream 172535 2468255 ~ 2468604 (-) True AMCG00002066
AMCG00002067 mRNA upstream 227030 2522750 ~ 2532760 (-) True AMCG00002067
AMCG00002068 mRNA upstream 339549 2635269 ~ 2645414 (-) True AMCG00002068
AMCG00002070 mRNA upstream 358098 2653818 ~ 2662801 (-) True AMCG00002070
TU151271 other upstream 625532 2921252 ~ 2923221 (-) False AMCG00002085
TU151301 other upstream 699788 2995508 ~ 3004917 (-) True G120748
TU151364 other upstream 817722 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 1418147 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 1488516 3784236 ~ 3786544 (-) True G120927

Expression Profile