RNA id: AMCG00002065


Basic Information

Item Value
RNA id AMCG00002065
length 732
RNA type mRNA
GC content 0.63
exon number 6
gene id AMCG00002065
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2310794 ~ 2319970 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtGTGCTGAAGCTCTGCTGCCGTTAATGGCCTCccgttgtgtgtttgtgtcccaGGAGAGCGAGGACGCAGTGAAGGCGCTGGCCAAGGAGAAGGACCTGCTCGAGAGGGAGAATAACTGTGTGGCACAGAAAATGGAGTTCCGGGTGTTTGATCGCTCTGTGGACAAGGACCCCTCCCCCAGGGTCATGGCGGCCAAGCAGTCTCTTGCCACCCTGACCAAGGACGTGCCCAAGAGACACTCCCTGGCCATGCCCACCGAGACAGTGCTCAACGGCAACCAGGAGTGGGTGATGCAGGCTGACCTGCCCTTGACCGCGGCCATCCGGCAGAGCCAGCAGACCCTGTACCATGGCCACTCGGCACACTCCGGTGACCGGCAAGCGGCAGTGAGGGTGAGCCCGTGCCACTCGCGGCAGCCCTCCATCATCTCGGACGCCTCGGCCGTGGAGGGGGACCGCTCGTCCACGCCCAGCGACATCAACTCCCCCCGGCACCGGACTCACTCCCTCTGCAATtcGCTAGAGGACCTCGAAGACCAGAAGcgcaagaagaagaaggagaagatgGGCCTGGGCTCCCTGTCACGAGTGTTCGCCCGGGGCAAGCAGCGCAAGTCCCTGGACCCCGGCCTGTTTGATGGACCTCCGCTCGGACCCTTGGCCTCTCCCAGCCACTCTGGACTCCTGGCCGTGTTTTACGTGGTGGTTCTGCTCTTGGCCTCCATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151109 lncRNA downstream 86389 2223343 ~ 2224405 (-) True G120601
TU151094 lncRNA downstream 147938 2162641 ~ 2162856 (-) True G120589
TU151076 lncRNA downstream 314727 1995768 ~ 1996067 (-) True G120574
TU151075 lncRNA downstream 316771 1993728 ~ 1994023 (-) True G120573
TU151074 lncRNA downstream 317171 1993333 ~ 1993623 (-) True G120572
TU151217 lncRNA upstream 375611 2695581 ~ 2695977 (-) True G120683
TU151216 lncRNA upstream 376093 2696063 ~ 2696387 (-) False G120683
TU151243 lncRNA upstream 525412 2845382 ~ 2847937 (-) True AMCG00002078
TU151291 lncRNA upstream 633303 2953273 ~ 2953482 (-) True G120743
TU151294 lncRNA upstream 665603 2985573 ~ 2986779 (-) True G120746
AMCG00002064 mRNA downstream 15074 2282905 ~ 2295720 (-) True AMCG00002064
AMCG00002062 mRNA downstream 45258 2257811 ~ 2265536 (-) True AMCG00002062
AMCG00002063 mRNA downstream 67477 2240408 ~ 2243317 (-) True AMCG00002063
AMCG00002061 mRNA downstream 100494 2175480 ~ 2210300 (-) True AMCG00002061
AMCG00002058 mRNA downstream 148960 2161544 ~ 2161834 (-) True AMCG00002058
AMCG00002066 mRNA upstream 148285 2468255 ~ 2468604 (-) True AMCG00002066
AMCG00002067 mRNA upstream 202780 2522750 ~ 2532760 (-) True AMCG00002067
AMCG00002068 mRNA upstream 315299 2635269 ~ 2645414 (-) True AMCG00002068
AMCG00002070 mRNA upstream 333848 2653818 ~ 2662801 (-) True AMCG00002070
AMCG00002071 mRNA upstream 358414 2678384 ~ 2680488 (-) True AMCG00002071
TU151271 other upstream 601282 2921252 ~ 2923221 (-) False AMCG00002085
TU151301 other upstream 675538 2995508 ~ 3004917 (-) True G120748
TU151364 other upstream 793472 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 1393897 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 1464266 3784236 ~ 3786544 (-) True G120927

Expression Profile