RNA id: AMCG00002068


Basic Information

Item Value
RNA id AMCG00002068
length 5278
RNA type mRNA
GC content 0.60
exon number 4
gene id AMCG00002068
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2635269 ~ 2645414 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGCCCGAGGGTGACCAGGCAGGGAAGAGGATGATGTCATCTACATTGATGGCAACCACATGGGCTCAGCACCACCGGGAGCCCAGCAGTAAGTCGATACAAGTACGAGCACAACCACTTGCCAACCTTGATGTAGAGATCAGGGTGGGAGTGTTTGAAGTGCAATCCAGGAAGAAGCTTTTGGAGCGAGCGAAGCAGGGCGGCGTGGAGGGGTTCAAAGGGCAGCAGCAGACGTCTGATCCCGAACGCGTCATCACAGAGATGCGGGAATCGGAGGACGGTCCTAAAGAAGAGGATGAGAAGCCTTCCCTTTCCTCGGAGCAGGTGTCACGGCAGACCTCTGCGTCTAAAGAGCCGGCCGAGCCAGAGCAGCTCCCCTCGGCTGTGAAGGAGGACGCTGCGCCGTCCCACACCCCGGAGGTGCTGGCAGAGGAGGAagtggaggaggaaggggaagacgaagaggaggacgaggaggaggaggacgaggaggaggaagagtacGAGGAAGAGGGGGATCCAGGGAAAATGGCAGAGGAGCAGCTGCCAGAGGAAAGTTGCCCCAGCTCTCCAAAATCAGAGATCATAGAAACGGAAGAGCCGCCGGATACAGAGCCCAGCCCTCCAGGGTGTGAGGAGGAGATGTCCGAGAGGCTCCAGCAGGAATCCACGCCGGGGTCACCACTGCAGAAGCTCGACCACGACCCCGAGGGCGAACCCCCCGGCTCCTTCCTGTTCCCGTGCCAGCACTGTGAGCGCCGCTTCACCACCAAGCAGGGTTTGGAGCGCCACATGCACATCCACATCTCCGCCAACTGCCACACCCACACCTTCAAGTGCCGATACTGCGGCAAGGCCTTCGGCACACAGATCAACCGGCGCCGGCACGAGCGGAGGCACGAAGCTGGGCCCAAGAAGAAGCCGGGCTCACTCTCCGGCACCGCAACCTCTTTCAGCCCCCCGCTGCCGACCGAGAGCTCCAGCCCGGACCTCGTCACTTCCTCGGGCAACTTCATCATCATGGGCGCCCAGAACGGCAGCGATCTGCAGGACACCTCTGAGTCGGAAAAGCCGAGCCCAGCGATGGAGACCGAGCGCACCGTCGTCCTGGATGAGAACGGGGAGCCGAGAGAGCAGCACCCTTGCAAGTACTGCAAGAAGGTGTTTGGCACCCACACCAACATGAGGCGCCACCAGCGCAGGATCCACGAGCGCCACCTGCTGCCTAAGGGTGTCCGCAGGAAAGGCATGCTCTTGCAGGAGGCGCaaccccagcagcagcagcggcctgCACCCCCACCGGAGGAGTCTCCCAACCCCAGCCCTCCGCCGGTCTACGTGCCCAGCGGGGATTTGGAAGATGAGGGGGATGCTGAGGAGGAGTACATGGTGGACATCTCCAGCAACATCTCGGAGAACCTGAGTCTCTACATCGACGGGAAGATCTTGTCCACCAGCACGGTCAGCACCTGCGAGGTCATCGAGGTCGACCCCGGTTCCGCCACGCTGTTCGGCCTGGATGCTCTGATCATCAGCCCCGACAAGGTCACTACCACCACTCTGAAGGTGGAGACCACCAGTTGCATGGTGAAGGAGATTCCCAATGGTGGCCAGGCAGTCCTCAAGAGAAGAACTGCCACCCCACCTCTTCTCCCCAAAATCAAGACCGAGGTGGAATCCGAACCCATCACACCTTCCTTGCCTtcttcctcgtcctcgtcctccacctcctctTTGGTGAGCACCATCTTCCCTCAGGCCACCGAGACTTTAACCTTCCAAAAGGAGAAGGCAGTTTATCTGTCCCCAAAGCTGAAGCAGCTCCTACAGACTCAGGACAGTCATAAGCCGACCTTGACTCTCTTCACTGATGGACATAGGCTGGGTCCTCCTCTCATGTCCGTCACTGCTTTGCCTGCCGGGTCGGGGAGGTTCAAGAGGAGAACGGCCTCCCCTCCGAACTCCCCACAGCACAGCCCTGGCCTGAGAGTGGACACGGGGAAGACCGAGACCGGAGCCCCTTTTGGACTCAAGGTACCCAAGCTGGAAAGCCACTGCAGCTCCCCCGCCTGGAGTCTGTCCAGCAGAGACGAGAGGGACACTCTGAGCCCACTTGGTGCGGATGCCTTCAAGGGCTCTCCCGTAGACTGGTCGACTGGTAGAAGCGGTGGGAGCTCCTGCAACCAGCAGCCACTGGACCTCTCCAGTGGGGTCAATAAGAGAAGTGAGGGCGGTGGGAAGGGGCCGGGGGAAGCAGTATTGGATCTGAGCATGCACAGAAAGCCTTCGCCTGAGGCGGAAGGGAAGGGTAGTACCTCCCCCCAGCCCCTTGTCAAGAAGAAGAAACCCAACACAAGCATGCTGGAGAAAGTGTTGATGAACGAGTACGGAGGCTTAGAGGTGCCGGCTGACGAGAACCCTGCTGCACTCGATAGCCCCAGCGGTCTCTCTGCGGTTGATCTGGCCACAGACGCCCCTCCTGATTCCCCCTCCCCAGCCCCTGAAGCACTTTCACCCGAATCTAGTCCCCCTTCTACACTTCATCCGCCCCCTCCCTCACTAACCCCCGTGACAATGCATCCCCCCTCCCCTGGCACCCCGGCCCTAGCTTCCCCCACCCCGCCTCCGCCAGTGCTACCCACCGCCCCGTCTCCCCTCCCGGCTCCCACCTCTCCTGCTCCCCAGTCGTCCTGCTCCCCAGCCCCGTCTTCTCTTCCGGTCCTGTCACCTGAAACTTGCCCCAGTCCAGTAAACCCGAGTCCCAGGGATTCCCCACTTTCTCCCGATTCAGATCCCAGTCCCAGACTCCTAGATTCTTTGCCAGATGTTATCAATCCTAACCCTGAGCCTGGAGATCCCAGTTCGAATCCTCTAGATCCTCCTGCACCCTCACTTCCACCTCCCACGTCTGCAGATCCTTCAACAGGTGAAGTAGAACTCCCCCCTCCCACACTGGATTCCCCAAATACACCTGAAGAGCAGTTATCTCTTCCTGTGGGTCCCTTAGCATCTTTACAAGATTCTAGTATTAGTTCTGCAAGTGGTCCCCCTAGTGCAGAGTCTCCTGTACAGCTCCCTTTACAAGATCAAGACCTAGGCCTAGATCCCACCCCTGTTACACACCAGTACGGTGCTGTGGAACCTTCCCTGCATCATGCCATCATACCAAAGCAGAGATCAGAACCAGAAGAGCAGCCCCAACCCTCCCCGTCCCCATCCCCTTCCCATCCACCATCCCTGGATCCGCCTATTCTTACATCATCTATCCCAGACTCATccctttcacccagttctcttGCGCCCTTGGAATCGGATAGTCCACCACTTCTAGTCCTGCCCACTCATCCGGCAACCTTCATCATCAAAGAGGAACCCATGGATGAAGAGATGCCGGACGCTGCGGTCAGCCCTGCTGCCGTTCCCTCCGCTTCTCCTCCTCCCGCAGCCGGCGAGCCTCTGAAGACTTCCGACAAAGAAGAAGCCCCGCAACCAGAGACGTTCTGCAAGAGCTTCGTGTGCAACGTGTGTGATGAGCCGTTCCCCTCCATCAAGGAGCTGAGCCGGCACATCGCCGAACACGCGGACGAGTGGCCCTTTAAGTGCGAGTTCTGTGTGCAGCTGTTCGGGGATGCCGGGGCCCTGCTAGAGCACCGCTCGACTCTGCACGGCGTCGGCAGGATCTACGTTTGCTCCACGTGCACGAAGGAGTTCGCCTTCCTCTGCAACCTCCAGCAGCACCAGAAGGATCTGCACCCCGGACAGGACTGCACGCACAAGGAGGTGGAGAACGGCAAGCTGAGGCCACAGAACTACACTGACCCGACCCGCGCCAGCCTGGAGCCGCCTCCCTCCAAACCTGCTAGCGAAGCTGCCTTTGAGGGCAGTGCCCCATCTTCTCAGCCGAGCCCTGAGGTccataaagaagaagaagaagaagaggaggaagaggaggaggatgaagaggaaGATGTTGACAACTCCACTGAGGAGCTCTACACTACAATAAAGATCATGGCTTCTGGAGGGGGCAAGCCCAAAGGTCCAGATGTGCGTCTGGGCATCAACCAACACTACCCAAGTTTCAAGCCGCCCCCCTTCCCCTACCACAACCGCACACCCACCGGCTCGGTGGCCTCAGCTACCAACTTCACCACACACAATATCCCACAGACCTTCAGCACTGCCATCCGCTGTACGAAGTGTGGCAAGAGCTTCGACAATATGCCCGAGCTGCACAAGCACATCCTGGCGTGCGCCAACGCCAGCGACAAGAAGCGCTACACCCCCAAGAAGAACCCCATCCCGCTCAAGCAGATCGTAAAACCCCACAATGGAGTACTGGTGGCTGCCACTGGGGCCAACCCCTCTGGGCAGAACGCCTTCCGGAGGATGGGCCAACCAAAGAGGCTGAACTTCAGCCAAGAGCCCTCCGCCAAGTTGAAGCTGAATGCCctgaacaagaagaaaaacCAGCTGGTCCAGAAGGCCATCTCCCAGAAGAATAAGTCGGCCGCCACTGCAAAGAAATCCTCCAGCCTCGCCCTGGAGGACCAGGAGATGCACGTCTGCCCTCACTGCAGTCGAGAGTTCACCTACCTGGGCAGCCTCAACAAGCACGTTGCGGTCAGCTGCCCCAGGAAGCCACCTTCCAAAAGGGCCAAGAAACCTGGTGTCGGTGGGCACTCTTCCCAAGAGAAGAACGGGAATCTGCGCCGACGGACAGCTGACTCTGAGATCAAGCAGCAGGGAACGCAGGCCAAGCTGGGCAAGACCAGGGCCCGCACTTCAGGGCCTGCGACCAACATTATCCTGCTCGCCAAACCCCAACCCAGCAAGGTCAAACCCACAGTGCCCCAGGCCCGGCCGAAGAGGCCCGCCTCCTTCCAGGCCACCTCGGTCCCGTACAGTAAAAAAAGCAGGACTGTGTTCAAGGGTGGCTCCCAGCTGCCACCACCTCCTCCCCCGCTGCCCGCTCCGGCCGCGCCCGGCCACCCCTCGCAGCGGCAGCTCATGAGGATGCAGCGCGGCGGGAAGGAGCTCCCGACCAAGAGAGTGGTGGAAGTGAAACCACACGTGCAGTCTCAGCAGCCCCAGCAGGCGGTGAAGAAGGAGGAGCGGTTCTCGGTGAAGACGCgtgagagagtgggggggcCGGTCACCCGCAGTTTACAGCTGGCCAGCAGCGTGAACACGGCCGACGTGAAGACGGATGACCTCTCGGGCCAGGAGTCCAGGGAGCCTCAGGTAGACATATGCATATGCATGtcccatttaatt

Function

GO: NA

KEGG:

id description
K11432 PRDM2, RIZ; [histone H3]-lysine9 N-trimethyltransferase PRDM2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151109 lncRNA downstream 410864 2223343 ~ 2224405 (-) True G120601
TU151094 lncRNA downstream 472413 2162641 ~ 2162856 (-) True G120589
TU151076 lncRNA downstream 639202 1995768 ~ 1996067 (-) True G120574
TU151075 lncRNA downstream 641246 1993728 ~ 1994023 (-) True G120573
TU151074 lncRNA downstream 641646 1993333 ~ 1993623 (-) True G120572
TU151217 lncRNA upstream 50167 2695581 ~ 2695977 (-) True G120683
TU151216 lncRNA upstream 50649 2696063 ~ 2696387 (-) False G120683
TU151243 lncRNA upstream 199968 2845382 ~ 2847937 (-) True AMCG00002078
TU151291 lncRNA upstream 307859 2953273 ~ 2953482 (-) True G120743
TU151294 lncRNA upstream 340159 2985573 ~ 2986779 (-) True G120746
AMCG00002067 mRNA downstream 102509 2522750 ~ 2532760 (-) True AMCG00002067
AMCG00002066 mRNA downstream 166665 2468255 ~ 2468604 (-) True AMCG00002066
AMCG00002065 mRNA downstream 315299 2310794 ~ 2319970 (-) True AMCG00002065
AMCG00002064 mRNA downstream 339549 2282905 ~ 2295720 (-) True AMCG00002064
AMCG00002062 mRNA downstream 369733 2257811 ~ 2265536 (-) True AMCG00002062
AMCG00002070 mRNA upstream 8404 2653818 ~ 2662801 (-) True AMCG00002070
AMCG00002071 mRNA upstream 32970 2678384 ~ 2680488 (-) True AMCG00002071
AMCG00002069 mRNA upstream 37288 2682702 ~ 2689587 (-) True AMCG00002069
AMCG00002072 mRNA upstream 55824 2701238 ~ 2727268 (-) True AMCG00002072
AMCG00002078 mRNA upstream 200209 2845623 ~ 2847428 (-) False AMCG00002078
TU151271 other upstream 275838 2921252 ~ 2923221 (-) False AMCG00002085
TU151301 other upstream 350094 2995508 ~ 3004917 (-) True G120748
TU151364 other upstream 468028 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 1068453 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 1138822 3784236 ~ 3786544 (-) True G120927

Expression Profile