RNA id: AMCG00002069


Basic Information

Item Value
RNA id AMCG00002069
length 887
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00002069
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2682702 ~ 2689587 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGCTTTCAAGGCCCGGCCAGAGCAGGAGGCAGGGCCGAAGCTCAGCAGAGACCACCTAACACCGCCGGACCCCCGCCTTGTTTTCAGACAGCGCCAGTCTCagtctctcactccctccctccctctccctctctctctccccctccctctccctctctctctctctctctctctctttctctctctctcacatatcAGTTGCTCTAAGAGGCTCCTGCTTTTTCACAACTTTCAGAAGCTACAGCAGAGAAGAGCACTCCTCTTtgtaacttgtgtgtgtgtgtgttgtgagtgaGTATTTCTTTGTGTGCGACTGGTAGGGGTAGGCCGAGAGATTTCGTCCACATCTTTTCTGTCCTGACATTCACTGGGAGTCCAGCACCCTCGCTGAAGCAGTGGCCCCCGGACCTCTGGACTCGTATTGAGCTGCTCTGGTGCCCGGACTCGACCGCGACGATGACCGCACTGCCCGTCCTGCTCCTCCTGGCCCTGCTGGCTCCGCTCCGGGCCGTCCCTCTCGATGGGACCACCCCAgccacaaccacaaccacaaccacaacctCAACCTCAGCCTCAGCCCCAAGCCAAACACAAGCGCGTGAGGAGAAAAACGTCTCTGCCCTCACCACCACGATGCCGGTCACCACCATGAGGACAAGCCCTGTGGGGACAGAGACCGCGCTGCCTGGCTTCACGCAGGGGGACCGGACCAGTACGCCTGACAGCAGCACTGAGGGAAACTCCACACAGACGGTCGCAGTCGAGACATGCGGTGACTGGaacctgctgctgctgattgCCATCATTGCGGGGTCCGTGGTGGCCTTCGTCATCGTCATCGCTGTGGTGTACATGGTGGTCCGGAAGATGGGCCGCTACTCGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151109 lncRNA downstream 458297 2223343 ~ 2224405 (-) True G120601
TU151094 lncRNA downstream 519846 2162641 ~ 2162856 (-) True G120589
TU151076 lncRNA downstream 686635 1995768 ~ 1996067 (-) True G120574
TU151075 lncRNA downstream 688679 1993728 ~ 1994023 (-) True G120573
TU151074 lncRNA downstream 689079 1993333 ~ 1993623 (-) True G120572
TU151217 lncRNA upstream 5994 2695581 ~ 2695977 (-) True G120683
TU151216 lncRNA upstream 6476 2696063 ~ 2696387 (-) False G120683
TU151243 lncRNA upstream 155795 2845382 ~ 2847937 (-) True AMCG00002078
TU151291 lncRNA upstream 263686 2953273 ~ 2953482 (-) True G120743
TU151294 lncRNA upstream 295986 2985573 ~ 2986779 (-) True G120746
AMCG00002071 mRNA downstream 2214 2678384 ~ 2680488 (-) True AMCG00002071
AMCG00002070 mRNA downstream 19901 2653818 ~ 2662801 (-) True AMCG00002070
AMCG00002068 mRNA downstream 37288 2635269 ~ 2645414 (-) True AMCG00002068
AMCG00002067 mRNA downstream 149942 2522750 ~ 2532760 (-) True AMCG00002067
AMCG00002066 mRNA downstream 214098 2468255 ~ 2468604 (-) True AMCG00002066
AMCG00002072 mRNA upstream 11651 2701238 ~ 2727268 (-) True AMCG00002072
AMCG00002078 mRNA upstream 156036 2845623 ~ 2847428 (-) False AMCG00002078
AMCG00002079 mRNA upstream 166471 2856058 ~ 2857127 (-) True AMCG00002079
AMCG00002077 mRNA upstream 172325 2861912 ~ 2872273 (-) True AMCG00002077
AMCG00002085 mRNA upstream 232201 2921788 ~ 2931018 (-) True AMCG00002085
TU151271 other upstream 231665 2921252 ~ 2923221 (-) False AMCG00002085
TU151301 other upstream 305921 2995508 ~ 3004917 (-) True G120748
TU151364 other upstream 423855 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 1024280 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 1094649 3784236 ~ 3786544 (-) True G120927

Expression Profile