RNA id: AMCG00002073


Basic Information

Item Value
RNA id AMCG00002073
length 3607
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00002073
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2857667 ~ 2861786 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTCTGGTGTTGATGTTCTTTTAGACCCGTGATCAACACGATGGCGAGCTCTGGATCCCCTTCTTCCCCCACGGCGGAGGGCAAGTTGGACGTGGAGTTCACCGTGCCAGCGCAGGTGGAGGTGGCCGGTCACCTGATGGCGGAGTTTGCCCAGCGCCACTGCTCCGCGGGCCGCAGGGTGGTCCTGGTCACCTCTGGCGGCACCAAGGTCCCGCTGGAGTCCAGAACGGTGCGCTTCCTGGATAATTTCAGTAGCGGGCGGCGGGGCTCTTCTTCCGCTGAATATTTCCTGGACTCGGGGTACGCGGTGATATTCTTGCACAGGCACCGCTCCCAGTACCCCTACTCCCGGTGCTACGCTGGGGTCAACCTCCTGGACGCTCTGCTGCTGCAAGGGGGCGAAGGCGGCTCCGGCCAGGTCGTGGCGGACACCGGGGCTCTGCCGGACATTGCCGCCGTGCTGCGGCGCTACCAGGCAGTGAAGGACGCCGAGCTCTTGCTGCCAGTGGAGTTCAACACACTGTCTGAGTACCTGCACCTGCTGAAGGCCGCGGCGCAGGCTCTGAACCCCATCGGTTCCAAGGCCATGTTTTATTTGGCTGCTGCCGTCTCCGATTTCTATATTCCTGCTTCAGAAATGCCTGAACACAAGATCCAGTCCTCCAACGGACCCCTGCAGatCAGTATGAAGATGGTGCCCAAGATGCTGTCTCCGCTGGTGAAGGACTGGGCCCCCCGGGCCTTCGTCATCTCCTTCAAGCTGGAGACCAACCCCTCCATCCTGCTGGAGCGGGCCCGGCGCGCGCTCGACACCTACCGGCACCAGGCCGTGGTGGCCAACGTGCTGGACACGCGGCGCGGCTTCGTGGTGGTCGTCACGCCCCATACGCAGGTGGAGCTGGCCCTGAGCGAGGACGAGGCACGGCAGGAGGTGGAGATCGAGGAGAAGATCGTGGCCAACCTGACGGCCGCCCACACCGCCTTCATCGAGGACTGAGGCACCggggggcggggtgggggggtagagaGGCATGTTAGTGTCGAAAATTGCACTTTGTGATCGGTTAAATAATTGAAGATCTGGGAACAGTCGAGGCCGAGCAGGAGAGACGCATTCAACCCGCAGTCCCCACTCATTAACGGGAGCATTAAAGCTTCATAAGCCCCCATCGCAGCACTTGCTTAGAGAACGGCAGTCCTCAGCAGCCTGAATTATTGAACGACCGCGCGGCGCAGAAACTGGGTCGGCGGCTCCGGATGGGTCAGTCATTAATCATATCGGTGCCATCTTTGTTTCACGTCAGCCAGTCCGAgcttttgttaaataataagtGAGTAAATGAGCAGGGAGCTTGTGTGAAGAGCGTGAAGGGGTACAAAGGTGAAAAAGCCAGTACATCAAACAGGATACGGCCACAGAATCAAGAGCTTTTATTCCGTCCTCTGCAATGGCTCAATTACGACTCTGGCTTTCAGGTAGGCGGCTGCTTCACTATTTATTCACGGGGTGCGTACTTTAAAGATGGAGGAGAGACACTTACCCAGTCCTGTAGCGTCTCGCTGCCGAGGACAACCTGCGACCCTTCACTGAACCCGTCCTTAATGCCAATCAGTCGGAACAGCGCTTTAAGGAGCTCATGGTGGTACAGGCAAGCGACTCCGAATACCACAAGCGATCAGCAGTCCTTGATGAGCAGGAGCAGCTCTTTTGTTATGAATGCTTGTGTTACGGATATCTGCAATAATGTACCCAGCACAGTATGAACTAACAAGCAAAGAGTTGCTGAGCTGCAATTTAGTTCTCATGCAGCATACATGGCCATCTAGAAAGGCTCAGACCGAGGTGTAACTGATTAACATAGCTTTCTATCCATTTGAGCTGGGGTGTCTGATAGCATTATAAGAAATACACAGATCTTTTGTCGTGCCATCTAAATAGTTAGGAGACTCGATTTTTTTTTAGATCGTGCGCTGAAATATTTAGCCAAACCAGGAAGTGAGAGATGAAAAATACATCCCAATAACCCAGGAGAAACAGTTTTCTGCACCAATACATCCCTGTGTACAAATACGCGATTTCTGCTTGTAATGCTATAGATCTTGTCACTCTTTGACCTGAAAGACAGAGACACGTTGGCGTCTCGGTCTCGGGGATCCGGTACTGCCATGTGCCACTCTTTGACCGGGGCCCTAAGATTAGAAAGCTGTCGCGGATCACCAATCCTCTTTGCCCAGATACGGGCTAAAGCGATTAGAGCAAGGCTGTGATCCGAAAGCGGCAATCCAATACAGAGGCCTTGAAGTCATCGAGTAAGACGCGGGAGAACAGGAGACCAGGCTGCGGTGGAGTGAAATGCCGAAGGGCCTTAAGACGCGTGTGTGGTGCCCCCACGGTTAGAAGCGCTGTGACTCCCTGATACAGACAGGAAAAGGCTggggatatttaaaatattgaataagtAAACTAGTGTATCTTTTGGATGATAAAGCCGATCAAGTAGAGCAATACTAAGAGCAGAagtaatattaatttgaattgacATTTAGTTTGCTTCCGAAACTCTTCTTATAGGAGTAGCGCCGTGTTAACCATTCTGAagcttaaaaaaatgctgtaccCCAGAATCCACTTAACTTAGCTTCTCAGCAGATGCTATTTTCACTGTTAATAGTCCAAGCTGAGGGTGTCAGTTCTGCTGTAATGAAAACCTGATGAGAATAAATGTACAGTTAACTTTATATTTGCTAAACGGATGTAAAAATATCCTCCTGAAATCTATAAAGAGGAGATGTATAGCAATCTGCTCAAACTCAATCACTGCCTGCCTTTGTTCAGTTTAAAGCATGCCATTTACTCTATGTACGCCCCAAAATGTATTTCCCTTTATCACAACCATCAGGGAAAGCTGCTCTGGAGcaatatgtttgtttctgtaaattCATCCGGGGGGAGATCGCATAATAAACGGCACAATCCCTGAAAAAGCTTTGGTAAGATCCATACCGTTCTACATCTTAACTCAATGGGTGACGTGTTAATGAATGGCTTATAGTTTCTGCAGGGAGCAAAGGGTTTCAGTTTGAGCAAAACTGATTTATGACTTGAAAAACTGTATAATCTGTCCATACACTGACAACACTAGGACACCTGCCTCAGAGAGCCTGACTGGAGGTTTATAGTGTGACCCGAGGGACCCACTCATGAGGGCCTATACTACCTGTTAATTCATTTATGGTTAACTTGCAATTTAGCAGTTAATACAGGGACCAGGTATTACTCGGTGTAAGAGCAGTTCTGACTTGTGACCCACACTGAATAATTCATTCCCTTTCCTtttctaaacacacagccaggcaATGAATACAGGGACAGCAATTCAGTATCGTCTCACCTTTAGCTGAACCTTTGCTCCGCATCGAAGAGCTGAACAGACACtctatacacagacacactggagGATTACTACGCGTGGATTCAGTTTAGATTACACTTAACCTTTAGCTTAATTCCTGCTATTTATTGAGGAATACGGTGCCTTTGATGTTGAATACTCGTTTCAGAATTAATACTTACTGTATACAAAACACGGGACCAGTAGAGGGACA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016874 ligase activity molecular_function

KEGG:

id description
K01922 PPCS, COAB; phosphopantothenate---cysteine ligase (ATP)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151233 lncRNA upstream 3540 2852154 ~ 2854127 (+) True AMCG00002076
TU151207 lncRNA upstream 161260 2696064 ~ 2696407 (+) True G120674
TU151110 lncRNA upstream 631687 2225780 ~ 2225980 (+) True G120602
TU151068 lncRNA upstream 654296 2202617 ~ 2203371 (+) True G120566
TU151067 lncRNA upstream 672687 2184780 ~ 2184980 (+) True G120565
TU151234 lncRNA downstream 129 2861915 ~ 2866024 (+) True G120692
TU151316 lncRNA downstream 178781 3040567 ~ 3042435 (+) True G120755
TU151324 lncRNA downstream 181854 3043640 ~ 3046804 (+) True G120763
TU151335 lncRNA downstream 230008 3091794 ~ 3092899 (+) True G120774
TU151339 lncRNA downstream 237821 3099607 ~ 3100142 (+) True G120778
AMCG00002076 mRNA upstream 3553 2852178 ~ 2854114 (+) False AMCG00002076
AMCG00002074 mRNA upstream 15704 2831684 ~ 2841963 (+) True AMCG00002074
AMCG00002075 mRNA upstream 40695 2816757 ~ 2816972 (+) True AMCG00002075
AMCG00002060 mRNA upstream 606528 2248017 ~ 2251139 (+) True AMCG00002060
AMCG00002059 mRNA upstream 636883 2216551 ~ 2220784 (+) True AMCG00002059
AMCG00002080 mRNA downstream 45079 2906865 ~ 2910535 (+) True AMCG00002080
AMCG00002081 mRNA downstream 85680 2947466 ~ 2952329 (+) True AMCG00002081
AMCG00002082 mRNA downstream 105579 2967365 ~ 2986779 (+) True AMCG00002082
AMCG00002088 mRNA downstream 133592 2995378 ~ 3004718 (+) True AMCG00002088
AMCG00002087 mRNA downstream 163278 3025064 ~ 3040023 (+) True AMCG00002087
TU151011 other upstream 916851 1924022 ~ 1940816 (+) True G120518
TU150681 other upstream 1864903 693622 ~ 992764 (+) True AMCG00002019
TU150678 other upstream 2173341 682670 ~ 684326 (+) False AMCG00002019
TU151290 other downstream 95122 2956908 ~ 2959475 (+) True G120742
TU151426 other downstream 672028 3533814 ~ 3536428 (+) False AMCG00002098
TU151430 other downstream 675833 3537619 ~ 3539554 (+) False AMCG00002098
TU151873 other downstream 2357044 5218830 ~ 5223498 (+) True AMCG00002152
TU152254 other downstream 3724868 6586654 ~ 6602608 (+) False AMCG00002190

Expression Profile