RNA id: TU151233



Basic Information


Item Value
RNA id TU151233
length 997
lncRNA type sense_over
GC content 0.63
exon number 4
gene id AMCG00002076
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2852154 ~ 2854127 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTTATTCGGTTAACGTCTCCAGAGGCTGGGCTCATTGGCACGCTCTGCCAGGCCTTCGTGGCAACCATAGCTGCACGTGGCCTGCAGGAACGCTGGACGGGTTCCCTCCTGTGCCGCGGTTGCACGCACGTGACATGTGCCCTGTAATTTCCCCATTGGACGTGTGCCTTTGCCATCCGCGTTTGACTGAGCGTTCCTGGGAGGAGCcccgtgtctgtgtctctgtgtagcCGGCTGTTTGTGCTCTGTCTGCGCAGTGACTCAGAGCACCAGAGAGCAGACTGGGTGGGCATCCATGAGAGGGTCTGCCAGCTGCTCATCCCCCTGCGCTGCCCTGTGCCCTTCCACGCTctggaggtggagagagagcagcaccGCGCCCGGCTCCTGAGTGGACAGGAGGAGCTGATCGCTGTGTCCCGAGCCGCAGCTCAGAAGAAGCTATTCGAGGGGAAGCACCAGGAGGCCGTGCCCGGGGCCCTGCTCTCCCTGCGCTACTGCAGTGACGTCCACGGCCCTGACGCCCTCCAGCTGGTCCCCTCCTACCTGCTCCTTGCCGAGGCCAACATTGGGCTGGGGAACCTGACCCAGGCGGAGGAGTACCTGTGCAAAGCCGAGTGGACGGTGTTGAAGAAGCCGAAGTGCCCCCGGTCCATCCGGCACCGACTGCACCGCAACCTGGGGCTGCTGTACGTCGCCAAGGGGGACCTGGAGGGGGCGCTGGAGCACTTCGCCAACGACGTTTACCTCGCCAGCGAGGAGTTTGGCACGGACAGTATCGTGACCTGCGGGGGCTTCTTCCACATGGCCGACGTGTTCGCCCGCCAGGACAAGACGGACGTGGCCGATTCCCTGTACACGGAGGTGAGGGTTCAGAGACGACACTTGTGCGGGATGGCGTTAGCTGATCAGGTCCAATTCCTGCAGCCGTTCCTCGTCTGCGCTCGTGCAGGGGAGAGATCCACTGCGTCACTATACTGCTGACAGAGCAAATGCa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151207 lncRNA upstream 155747 2696064 ~ 2696407 (+) True G120674
TU151110 lncRNA upstream 626174 2225780 ~ 2225980 (+) True G120602
TU151068 lncRNA upstream 648783 2202617 ~ 2203371 (+) True G120566
TU151067 lncRNA upstream 667174 2184780 ~ 2184980 (+) True G120565
TU151066 lncRNA upstream 675712 2174587 ~ 2176442 (+) True G120564
TU151234 lncRNA downstream 7788 2861915 ~ 2866024 (+) True G120692
TU151316 lncRNA downstream 186440 3040567 ~ 3042435 (+) True G120755
TU151324 lncRNA downstream 189513 3043640 ~ 3046804 (+) True G120763
TU151335 lncRNA downstream 237667 3091794 ~ 3092899 (+) True G120774
TU151339 lncRNA downstream 245480 3099607 ~ 3100142 (+) True G120778
AMCG00002074 mRNA upstream 10191 2831684 ~ 2841963 (+) True AMCG00002074
AMCG00002075 mRNA upstream 35182 2816757 ~ 2816972 (+) True AMCG00002075
AMCG00002060 mRNA upstream 601015 2248017 ~ 2251139 (+) True AMCG00002060
AMCG00002059 mRNA upstream 631370 2216551 ~ 2220784 (+) True AMCG00002059
AMCG00002054 mRNA upstream 769866 2081233 ~ 2082288 (+) True AMCG00002054
AMCG00002073 mRNA downstream 3540 2857667 ~ 2861786 (+) True AMCG00002073
AMCG00002080 mRNA downstream 52738 2906865 ~ 2910535 (+) True AMCG00002080
AMCG00002081 mRNA downstream 93339 2947466 ~ 2952329 (+) True AMCG00002081
AMCG00002082 mRNA downstream 113238 2967365 ~ 2986779 (+) True AMCG00002082
AMCG00002088 mRNA downstream 141251 2995378 ~ 3004718 (+) True AMCG00002088
TU151011 other upstream 911338 1924022 ~ 1940816 (+) True G120518
TU150681 other upstream 1859390 693622 ~ 992764 (+) True AMCG00002019
TU150678 other upstream 2167828 682670 ~ 684326 (+) False AMCG00002019
TU151290 other downstream 102781 2956908 ~ 2959475 (+) True G120742
TU151426 other downstream 679687 3533814 ~ 3536428 (+) False AMCG00002098
TU151430 other downstream 683492 3537619 ~ 3539554 (+) False AMCG00002098
TU151873 other downstream 2364703 5218830 ~ 5223498 (+) True AMCG00002152
TU152254 other downstream 3732527 6586654 ~ 6602608 (+) False AMCG00002190

Expression Profile