RNA id: AMCG00002078


Basic Information

Item Value
RNA id AMCG00002078
length 639
RNA type mRNA
GC content 0.62
exon number 4
gene id AMCG00002078
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2845382 ~ 2847937 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGATCCCAGTGAGATGGCGGCACACTTGATGCTCTTCGCTCTGGGTGGTGGCACAGTGCCAGCACTGACGTGTCATCTTCTTCATTTGGGGTTGAAGACACAGGCAATCCCAACCAAATTGTCCCACTGGCCTCCCGCTGCACGAGGGATGATTACGCCAAATGAGTCCCAGGCAGCAGAAGCCCATCAGGTCCTGAGTGCCATCCTGGCCGTCCGGGAGCGGGCCTCCCACCCGGAGCCGGCCGACATCGCCCGCACCGCCCACGCCCTGGCCCTGCTGCACTCCCTAGACGCGGACGCCGGGAAGGTAGGGGGCGCCGTGGGGACGATCACGCACTCCTCGGCGCGAGCCAAACCCCCAGATGAGCTGCTGTTGGTCACGGTTATGACCCGTCACCAGGCGAGTCCAGCGTCGTATGGAGCCGGAGTCTCAGTTCACAGCGATAGTTCTGTTATGGAAAAATCGAGTGCCAGGGAAGAGAGAATAATGCCACGTGTGACGTCTGGTTTTACTCCATGCCAGGCGGTGATGTATGGCAGAAAAGCCCTGCTGTCCAGCCAGCTGGTGCCGGACTGCGGCCTGACGCAGCCCATCGAGAGGCTTCTACAGCTGGCCGAGCCCAACGCGGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151216 lncRNA downstream 149236 2696063 ~ 2696387 (-) False G120683
TU151217 lncRNA downstream 149646 2695581 ~ 2695977 (-) True G120683
TU151109 lncRNA downstream 621218 2223343 ~ 2224405 (-) True G120601
TU151094 lncRNA downstream 682767 2162641 ~ 2162856 (-) True G120589
TU151076 lncRNA downstream 849556 1995768 ~ 1996067 (-) True G120574
TU151291 lncRNA upstream 105845 2953273 ~ 2953482 (-) True G120743
TU151294 lncRNA upstream 138145 2985573 ~ 2986779 (-) True G120746
TU151314 lncRNA upstream 161473 3008901 ~ 3020156 (-) True G120754
TU151321 lncRNA upstream 193120 3040548 ~ 3042500 (-) True G120760
TU151354 lncRNA upstream 244348 3091776 ~ 3092899 (-) True G120789
AMCG00002072 mRNA downstream 118355 2701238 ~ 2727268 (-) True AMCG00002072
AMCG00002069 mRNA downstream 156036 2682702 ~ 2689587 (-) True AMCG00002069
AMCG00002071 mRNA downstream 165135 2678384 ~ 2680488 (-) True AMCG00002071
AMCG00002070 mRNA downstream 182822 2653818 ~ 2662801 (-) True AMCG00002070
AMCG00002068 mRNA downstream 200209 2635269 ~ 2645414 (-) True AMCG00002068
AMCG00002079 mRNA upstream 8630 2856058 ~ 2857127 (-) True AMCG00002079
AMCG00002077 mRNA upstream 14484 2861912 ~ 2872273 (-) True AMCG00002077
AMCG00002085 mRNA upstream 74360 2921788 ~ 2931018 (-) True AMCG00002085
AMCG00002084 mRNA upstream 88093 2935521 ~ 2946153 (-) True AMCG00002084
AMCG00002083 mRNA upstream 109453 2956881 ~ 2961258 (-) True AMCG00002083
TU151271 other upstream 73824 2921252 ~ 2923221 (-) False AMCG00002085
TU151301 other upstream 148080 2995508 ~ 3004917 (-) True G120748
TU151364 other upstream 266014 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 866439 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 936808 3784236 ~ 3786544 (-) True G120927

Expression Profile