RNA id: AMCG00002080


Basic Information

Item Value
RNA id AMCG00002080
length 1748
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00002080
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2906865 ~ 2910535 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGAGAAAGACTGAACCTTCGACAAGAATCCCCTTAAAGCAGAATCCAATAAGCATTAACAATCTCTTTTACATTTAGTCCTTCAAGATAAGAAATGAGTTCTCTGCTGTTTGGAGTGGAGGGGTCAGGATACATCAAGATGGGACTGCCCCCAGCAGCATACAGCGACAGCTTTAGTTCGGGAGCCAAGCACATCGGATATCTGAAAGGCTTCTCTCATGTCCTGTTCAGTCCAGATGGGACAATGTTTGCCATCCGTGGAGCAGAAATCTACTGTGGGCCTCCCCCCTCAAATCCAAATGAAGACTGGCTGTCCACCAATGCAAAATGTGTTGGAAGAGCTGACTGGAATGGAGCGAGATTGCTCTTCTTCCATCCAGACGGCACGCTCTATGTCATTACAAATGACCAGCAATTGTACAAGGGCCCTTCCCCCGACAACATGCATGTGTCCTGGCTCTATAGGGTGGCCACCAAAATAGGAAGCAGAGGCTGGGACTTTCCTAGAGTATTTTTTGATCCCCAAGGCATGATGTACGCAGTGACTAAGCAGGGAAAATTAGTTAAAAGGATGCCACCAAAACATGCAAATGATCAGTGGCTGAAAAGCAGTGAGACCATTGGAAGCAGTGGGTGGGCTAAACTCACCCATTTTATGGCCTTCTCTGATGATGGCAATTTATGGTGCGTCTCAGATGTGGGGGGTAACATCTACTCTGCTCCACCACCTAGAAACGCCAATGTCAGTTGGATTAATGGAGCACAGAAGCTTGGCTATAACTACAACCGTTACAAGATCCTCGCATTCACAGAAGATAAAACTATCAGCAAGGTTTTGGGTATGGATTTTGATGTTGACAATGCAAACATCCTCTCAGTCAAACCCATGATTGTCGGGCAGCAGGACTATGACAACACCAAAGGCATCGTCCCATACGACACCACATTCCAgttttctgAAAAGGTGACTCTGGAAAGTACCTTCTCCCATCAGCATGGGTTCACTTTTGCAGTTGGAGCATCAACAACCTTTAAAGCTGGAATCCCAATGATTGCACAGAATGAAACCACTGTCAAGCTTGATATCAGCACAACCAACACGTGGAATTTTGTGGAGACTGAACGAACAGAGATTGTAAGCGTTTCCTCCATAAAGGTGACGGTGCCCCCGGGCAAGGCTTTGAGATTCAAGGCCCTCGTTCAGAAGGGAGAAATGGATGTTCCTTACAAAGCCCAGGTTGTCACCGAGTTTGGACACAAGACCACCGTCAGAGGAATGTGGAAGGGGGCCTCAGTGTCCAGGGTGGAAATTGAGCAACATAACATTACAGATGAACAAGTGAAGTAAACTTTGATCAGTAAATCACAGACCTTCCTTTGCTACACAAATGGAAGCTTGGGTTTCCAATATCAATATACCCGTTACAGGCAATGTTAAACTCTCACgaaataatgttaaatgatttatctttatcttttcACACTGTGCAACCTTTACCCAACAACCTACTTGcttaaattaattcatactccaaattcatatttataagAGAAGCATTAAGAGACATGAATTCATCAGTTTAGTGTGTGTTACCCCTGCATGGTACGGATGGATCCGCAGGTTGAGTTGTTGTattgcaagtaaaatcaatgatgctttgcttttgctttatttagCTTTAGTCTAAATGCTGGAATTGCATAACTTACTTTGATCTAAAAAGGTTTAAATCTtgatcaataaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151234 lncRNA upstream 40841 2861915 ~ 2866024 (+) True G120692
TU151233 lncRNA upstream 52738 2852154 ~ 2854127 (+) True AMCG00002076
TU151207 lncRNA upstream 210458 2696064 ~ 2696407 (+) True G120674
TU151110 lncRNA upstream 680885 2225780 ~ 2225980 (+) True G120602
TU151068 lncRNA upstream 703494 2202617 ~ 2203371 (+) True G120566
TU151316 lncRNA downstream 130032 3040567 ~ 3042435 (+) True G120755
TU151324 lncRNA downstream 133105 3043640 ~ 3046804 (+) True G120763
TU151335 lncRNA downstream 181259 3091794 ~ 3092899 (+) True G120774
TU151339 lncRNA downstream 189072 3099607 ~ 3100142 (+) True G120778
TU151340 lncRNA downstream 189743 3100278 ~ 3101046 (+) True G120779
AMCG00002073 mRNA upstream 45079 2857667 ~ 2861786 (+) True AMCG00002073
AMCG00002076 mRNA upstream 52751 2852178 ~ 2854114 (+) False AMCG00002076
AMCG00002074 mRNA upstream 64902 2831684 ~ 2841963 (+) True AMCG00002074
AMCG00002075 mRNA upstream 89893 2816757 ~ 2816972 (+) True AMCG00002075
AMCG00002060 mRNA upstream 655726 2248017 ~ 2251139 (+) True AMCG00002060
AMCG00002081 mRNA downstream 36931 2947466 ~ 2952329 (+) True AMCG00002081
AMCG00002082 mRNA downstream 56830 2967365 ~ 2986779 (+) True AMCG00002082
AMCG00002088 mRNA downstream 84843 2995378 ~ 3004718 (+) True AMCG00002088
AMCG00002087 mRNA downstream 114529 3025064 ~ 3040023 (+) True AMCG00002087
AMCG00002086 mRNA downstream 174477 3085012 ~ 3087293 (+) True AMCG00002086
TU151011 other upstream 966049 1924022 ~ 1940816 (+) True G120518
TU150681 other upstream 1914101 693622 ~ 992764 (+) True AMCG00002019
TU150678 other upstream 2222539 682670 ~ 684326 (+) False AMCG00002019
TU151290 other downstream 46373 2956908 ~ 2959475 (+) True G120742
TU151426 other downstream 623279 3533814 ~ 3536428 (+) False AMCG00002098
TU151430 other downstream 627084 3537619 ~ 3539554 (+) False AMCG00002098
TU151873 other downstream 2308295 5218830 ~ 5223498 (+) True AMCG00002152
TU152254 other downstream 3676119 6586654 ~ 6602608 (+) False AMCG00002190

Expression Profile