RNA id: AMCG00002081


Basic Information

Item Value
RNA id AMCG00002081
length 1851
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00002081
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2947466 ~ 2952329 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaacaaacaaaactgtttgcAAACATATCTTTTCACGTCATAattgtagttttattattttactgttataaataaatgtataaaacaacaattaatatttgtatctcCTCTTCTATCGGTTGCGTTATAGACACTGTACTTCTGTCCCTTACCAATATGGCCGCCAGCTTGCAAACTGCCACTCACAGAGCTTGTATAGACAAAACCAATCCAGTGATTCTATATATCCATGGCTTCGCCAGCAAAATAATTCACGGATCGTTATTTCCAGAACAGAGtcttaaaaacataatacatttcaaacttttATAGGTAAAACGTTTAATTTTAGCTGCTGTAAACGATCTTTGCGTGGACTCcttgacattttgtattaaaatgtatacataatagCAGTATTTGGTGACCTATTTATTGGCATACTCGGCTGCGTTGTTTGTCCAATGTATTGTACATTCGTTTTCACGGTGTTTTCGGTACCAGTGGGGTGGAAAGCCTCCACAGCTATTGGGAAACAGCGCTGCAATGGCGGAACTGCTGTGCGCGCAGTCGCGACGCCGCCCGGACTGCATTGGTGTCGCACAGCGGCCCGCAGGGTCGGCGCACACGGAAGCGGGTTTGTTTGGAAAGGTAGGCCGGGCAGCGTCTGGACGGGTAGGGGCTTCATCGCGCATCTCCCGGCTCGTTCCTGTCCTCCAGTCCAGCTGCGTTGACTCCTTCATGGTCATAAGACAGAGCGCCGCGACAATCCGAGTATTTATTCGCAGGCATTTTAGCTTTTCACGCCAGAATGAACGTGGACACCCCGCAGCCAGTCACGGCTGGAGGCGCCTCTTGCAACTCGTCCACTTCGAGCAGCAACAGCGTCGGCCACACCAACAGCGCCGTGAACAGCCTCTCCGCGGCGGCGCCCAGCAGCGTTCCGACATCCGCTGCCTCGGCGCCCTCCGCCTCGGAGACCTCGGTGTCTAACGGGGTGTACCTGCCCGCGGGCATCGCCAACGGGGACGTGAAGCCCATCCTCTCCACCACGCCGCTGGCAGACTTCCTCATGCAGCTGGAGGACTACACTCCCACGATCCCAGACGCAGTGACGGGCTACTATCTCAACCGCGCCGGCTTCGAAGCATCCGATCCACGAATAATCCGTCTGATTTCCCTGGCGGCTCAGAAGTTCATCTCTGACATCGCCAACGACGCCCTGCAGCACTGCAAGATGAAGGGCACGGCGTCGGTCAGCTCCAGGAACAAGACCAAGGATAAGAAGTACACCCTGACGATGGAGGACCTGGCCCCGGCGCTCTCCGAGTACGGGATCAACGTGAAGAAGCCGCACTACTTCACATGAGGGCCGCTCTCGAGCGCAGACGCACTGCAGGACCACTGTGCGGCGACGGGGCTCGTCCCGGCAGCCTCTGCGCCGTGTCGGGGCGTCTCCGGGGCTCCCTTCTGCTCTCCAGCCTCCCACGTCGCGGAGTTAGACACCTGGAatctctgcttttcttttttctgttccccccccccactgtgttttacattttagttttgccTAGAACTTATTTTTGTCATGTACCTAATTTCAGAAGCAGCCTACGTCGTATATATGTTTGTGGTATTTTTATTGACATGAATAGatacaaaaaagtattgaaaaataaacaaatggttGTCATGCCCCGTCCCCCTTCTGTCTGTTGATGTTCAGCTCTGACATTGTCACATTTCGGGTTGTGACGCACGTCCCAGTGTGTGTTAGGTTTTCTGCATAGTCAGCATCTTGGAAAGGAAATGTCCAAAaccctttttatatttatgttaagcagctaaatcaatacaaatttagtgCGGAG

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006413 translational initiation biological_process
GO:0005634 nucleus cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03134 TAF10; transcription initiation factor TFIID subunit 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151234 lncRNA upstream 81442 2861915 ~ 2866024 (+) True G120692
TU151233 lncRNA upstream 93339 2852154 ~ 2854127 (+) True AMCG00002076
TU151207 lncRNA upstream 251059 2696064 ~ 2696407 (+) True G120674
TU151110 lncRNA upstream 721486 2225780 ~ 2225980 (+) True G120602
TU151068 lncRNA upstream 744095 2202617 ~ 2203371 (+) True G120566
TU151316 lncRNA downstream 88238 3040567 ~ 3042435 (+) True G120755
TU151324 lncRNA downstream 91311 3043640 ~ 3046804 (+) True G120763
TU151335 lncRNA downstream 139465 3091794 ~ 3092899 (+) True G120774
TU151339 lncRNA downstream 147278 3099607 ~ 3100142 (+) True G120778
TU151340 lncRNA downstream 147949 3100278 ~ 3101046 (+) True G120779
AMCG00002080 mRNA upstream 36931 2906865 ~ 2910535 (+) True AMCG00002080
AMCG00002073 mRNA upstream 85680 2857667 ~ 2861786 (+) True AMCG00002073
AMCG00002076 mRNA upstream 93352 2852178 ~ 2854114 (+) False AMCG00002076
AMCG00002074 mRNA upstream 105503 2831684 ~ 2841963 (+) True AMCG00002074
AMCG00002075 mRNA upstream 130494 2816757 ~ 2816972 (+) True AMCG00002075
AMCG00002082 mRNA downstream 15036 2967365 ~ 2986779 (+) True AMCG00002082
AMCG00002088 mRNA downstream 43049 2995378 ~ 3004718 (+) True AMCG00002088
AMCG00002087 mRNA downstream 72735 3025064 ~ 3040023 (+) True AMCG00002087
AMCG00002086 mRNA downstream 132683 3085012 ~ 3087293 (+) True AMCG00002086
AMCG00002100 mRNA downstream 527515 3479844 ~ 3489633 (+) True AMCG00002100
TU151011 other upstream 1006650 1924022 ~ 1940816 (+) True G120518
TU150681 other upstream 1954702 693622 ~ 992764 (+) True AMCG00002019
TU150678 other upstream 2263140 682670 ~ 684326 (+) False AMCG00002019
TU151290 other downstream 4579 2956908 ~ 2959475 (+) True G120742
TU151426 other downstream 581485 3533814 ~ 3536428 (+) False AMCG00002098
TU151430 other downstream 585290 3537619 ~ 3539554 (+) False AMCG00002098
TU151873 other downstream 2266501 5218830 ~ 5223498 (+) True AMCG00002152
TU152254 other downstream 3634325 6586654 ~ 6602608 (+) False AMCG00002190

Expression Profile