RNA id: TU151271


Basic Information

Item Value
RNA id TU151271
length 1318
RNA type TUCP
GC content 0.51
exon number 4
gene id AMCG00002085
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2921252 ~ 2931018 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCCCAGAGTTGTGGCCTTAAATCAGTAGAcctaaatacagaaaatgttccATCTTTCTCATGTAGGACACTTGACGCCCAGGCCTCGGATCTACAGCCCACACAATCGGACACGCCAAGGGCTGAGGGGCCGAGGAGTAATAACAACCCTGCGCAAAGGGCCGGCGCTCTCGGAGACGGGCAAAGTGCGGAGCTGACCCACCACCACAAACCCAACGCCTGGAAGAAGGAGTTTACACCCTGGTACTCCAATCACAAACAGGAGGAAGTCCAGGGCCAGAGGCGCTACATTTCCACGCTCCACAGAGACCCGGTACCGGCAGCGTGGCCGAGCACCGGACTGAGACAACTGCAGTCGAGCCTCGAACCCGACACATCGGCAGCAAAGcAGCTGCAGAATGCCCGAGCGCAGGTCCCACACACAGGCGTGTCCAGCTCCCTCAGTGACATCCTGAAGGGGGTGCTGTCTCGCCGCAGCTCGACTGTCGCGCCCCGCCTTACGAATACCAGCAAGTCCATGTGGGACCTGAGCCTGTTCTCCACGCAGACGGACTCCATCGAGGACGGCTCCGAGAGGCAGGCGTCTCCTCGCATCTCACAAGCCCAGGACAAAGACCCTTACAGCCTGAAGGTGACGCCCGCAGTGGCCCTAATGAGGCACCGAGGGGACGAGTCCAAACCCGCCATTTCCAACCCCTCACCCCGCGAATCCTTCCTGCCCACCCTGAGACAGAAGAGGAGGAGCTTCAACTTCCTGAAGGAGTGGAAGAAGCCCCAGTGAGACCAGCGGACTGAAGGGGCCAACAGATCTTTTCTAGGCCCCGTTTAAGCCCGTTTAggatgagagaaaaaaatcccaTCCGAGTTGCTGCATTGACTGGGAAGGGAGCTGCTTCTGGGTGGATTTTACCACTGATCTGCAGTACCCCACAATATCCACTAGAGGGATGCCACCCCTTTTGTGAGAATAAAATCACTGTCATTATCATAAACGTTGCCACTGATCTGTTATTGACTTTTTGGTTATAAGGAAGTTTATTCCTGTCATCAGTGATTTGTTACGCAATACAAATCATAAACTGTAAAGGAGCTGAAAAGTGTGGAATGTAACAAAGTGTTTGAAACGCTCCCAGAACgtttttgcaaaaaaaaacaccacagaagTGAAATTGAAGACCAACATCATGAAACTGGTACGTTAAAAATGGTCTTCTCAGCACTTCTGCTTGGGAAAAGTAGATATGTACCttttaggttgtttttgttttttaaatctgcaatatctttacaataaaaaataatgaaaatgaaaagttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151243 lncRNA downstream 73315 2845382 ~ 2847937 (-) True AMCG00002078
TU151216 lncRNA downstream 224865 2696063 ~ 2696387 (-) False G120683
TU151217 lncRNA downstream 225275 2695581 ~ 2695977 (-) True G120683
TU151109 lncRNA downstream 696847 2223343 ~ 2224405 (-) True G120601
TU151094 lncRNA downstream 758396 2162641 ~ 2162856 (-) True G120589
TU151291 lncRNA upstream 30052 2953273 ~ 2953482 (-) True G120743
TU151294 lncRNA upstream 62352 2985573 ~ 2986779 (-) True G120746
TU151314 lncRNA upstream 85680 3008901 ~ 3020156 (-) True G120754
TU151321 lncRNA upstream 117327 3040548 ~ 3042500 (-) True G120760
TU151354 lncRNA upstream 168555 3091776 ~ 3092899 (-) True G120789
AMCG00002077 mRNA downstream 48979 2861912 ~ 2872273 (-) True AMCG00002077
AMCG00002079 mRNA downstream 64125 2856058 ~ 2857127 (-) True AMCG00002079
AMCG00002078 mRNA downstream 73824 2845623 ~ 2847428 (-) False AMCG00002078
AMCG00002072 mRNA downstream 193984 2701238 ~ 2727268 (-) True AMCG00002072
AMCG00002069 mRNA downstream 231665 2682702 ~ 2689587 (-) True AMCG00002069
AMCG00002084 mRNA upstream 12300 2935521 ~ 2946153 (-) True AMCG00002084
AMCG00002083 mRNA upstream 33660 2956881 ~ 2961258 (-) True AMCG00002083
AMCG00002089 mRNA upstream 120427 3043648 ~ 3066913 (-) True AMCG00002089
AMCG00002090 mRNA upstream 164323 3087544 ~ 3089884 (-) True AMCG00002090
AMCG00002092 mRNA upstream 172499 3095720 ~ 3110908 (-) True AMCG00002092
TU151301 other upstream 72287 2995508 ~ 3004917 (-) True G120748
TU151364 other upstream 190221 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 790646 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 861015 3784236 ~ 3786544 (-) True G120927
TU151612 other upstream 1291494 4214715 ~ 4219877 (-) True G120993

Expression Profile