RNA id: AMCG00002090


Basic Information

Item Value
RNA id AMCG00002090
length 684
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00002090
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3087544 ~ 3089884 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTCCTGGCTCTCACCTCTCACGGCACTGCAAAGGAATGATGGGCATGTTCCCCCTCTCCCTGGCCCTGGTGGTCCTGGCACTGTGGCCCAGCCATGCCAGACCGCTGCAGACAGACACTCTGAACGAGTTCATTGGTCTGCTCAGAGCCCTGGACTCTCCTGATGGACAGCTTGCTGAAGAGCGAGGATTGGAGCGCCTGCCAGAGGAGGCGGGGCTTATCGAGGACATCCCGGACAAGAGGGACCTCCCACGCCTCGGTGTGTTGGTGGACAGGCCACTCCCCCTAAAGGGCGGCGACAGcagGAAGATTATGGACTCATCTAGGTACCGGTTTTCCTTCCCACTGACCAATCTCCGTGGATAGGGACTGAGGGGTGAACTGGCGACCGGAgttaccccctgccctgctgctgCCCTGCTGCCGCCGCCGAGACTGCTCCCCCTGTGCCACCTCTCCTCTGCTGCCTGTCAGCCTCCGAGCCCGTCAGACCCAGGGGGCCCTGTTGCCCCAGTGCATGTTATGTAGCAGCCTGCTCTGAGCATCAGCAGGGTAATAAACAGAAGCCAGGTCTGGTATGATTGCATCGAGCTGTCTGTCTGCTGTCGTATTCCTCTTCCTGAATCACCCATCGCTTGCACTTTTGCTGAGACACTCCAGTTGGGAAGTACTTTACTTTCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151321 lncRNA downstream 45044 3040548 ~ 3042500 (-) True G120760
TU151314 lncRNA downstream 67388 3008901 ~ 3020156 (-) True G120754
TU151294 lncRNA downstream 100765 2985573 ~ 2986779 (-) True G120746
TU151291 lncRNA downstream 134062 2953273 ~ 2953482 (-) True G120743
TU151243 lncRNA downstream 239607 2845382 ~ 2847937 (-) True AMCG00002078
TU151354 lncRNA upstream 1892 3091776 ~ 3092899 (-) True G120789
TU151382 lncRNA upstream 86700 3176584 ~ 3176844 (-) False AMCG00002091
TU151407 lncRNA upstream 317601 3407485 ~ 3466461 (-) False AMCG00002097
TU151417 lncRNA upstream 403072 3492956 ~ 3494050 (-) True G120841
TU151419 lncRNA upstream 410397 3500281 ~ 3502928 (-) True G120842
AMCG00002089 mRNA downstream 20631 3043648 ~ 3066913 (-) True AMCG00002089
AMCG00002083 mRNA downstream 126286 2956881 ~ 2961258 (-) True AMCG00002083
AMCG00002084 mRNA downstream 141391 2935521 ~ 2946153 (-) True AMCG00002084
AMCG00002085 mRNA downstream 156526 2921788 ~ 2931018 (-) True AMCG00002085
AMCG00002077 mRNA downstream 215271 2861912 ~ 2872273 (-) True AMCG00002077
AMCG00002092 mRNA upstream 5836 3095720 ~ 3110908 (-) True AMCG00002092
AMCG00002094 mRNA upstream 23593 3113477 ~ 3128440 (-) False AMCG00002094
AMCG00002093 mRNA upstream 44224 3134108 ~ 3146480 (-) True AMCG00002093
AMCG00002095 mRNA upstream 56720 3146604 ~ 3147047 (-) True AMCG00002095
AMCG00002091 mRNA upstream 83621 3173505 ~ 3186353 (-) True AMCG00002091
TU151301 other downstream 82627 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 164323 2921252 ~ 2923221 (-) False AMCG00002085
TU151364 other upstream 23558 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 623983 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 694352 3784236 ~ 3786544 (-) True G120927
TU151612 other upstream 1124831 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4746611 7836495 ~ 7839411 (-) True AMCG00002223

Expression Profile