RNA id: AMCG00002093


Basic Information

Item Value
RNA id AMCG00002093
length 2756
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00002093
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3134108 ~ 3146480 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgcGTGTCAGGGCAGGGCCAGGCGGGCAGCTCCTTCGAGAGCCGGGTCGTGGTGGTGTGTGAGAAGATGATGAGCCGCGCTTGCTGGGCCAAGTCCAAGCACCTCATCCACTCCAAGACCTTCCGGGGCATGACCCTGCTGCACCTGGCGGCCGCCCAGGGCTACGCCACGCTCATCCAGACGCTCATCAAGTGGCGCACAAAGCACGCCGACAGTATTGACCTGGAGCTTGAGGTTGACCCTCTGAACGTGGACCACTTCTCCTGCACCCCACTGATGTGGGCGTGCGCTCTGGGCCACACGGAGGCAGCCGTGGTGCTGTACAAGTGGGACCGACGGGCGCTGGCCATCCCCGATTCCCTGGGCCGGCTGCCCCTGTCCATCGCCCGCTCTCGAGGCCACACCAAGCTGGCTGAGTGCCTTGAGCAGCTGCAGCGCGAggagcagcaacagcagcagccgcCCCCCACGCtgccccccacaccccacaTGTCCTTCTCCCCCGGCCCTGACGCCCCCGCGCCCGACAGCTGGATGGTGGCCTGGAGCGACACAGTGGCGACGCCCGGCGGGCAGAAGGCTGGGGGTGCCGTCAGCACCACCACCAACCCCAATCCAGACCTGAGGAGACCCCGGTCGGAGCCGTCCAGCTACTACAGCAGTGAGTGCCAGCGGGACCTGCCCCTGGCCAAGAAACACAAGCCCAACCCCGAGCTCTTCCAGGGCCGGCCCGACAAGGCCATGTCCGTCCCGCTCAGCttggagcagcagcagctccacaaGCTGGCCAGCAGCCCCCACCCGGAGAAGGGCCTGGAGGAGGGCGGCGGGGGGCTGTCCCAGCACAAGCTCGGGTCCTTCCGGGGACTCggtgggggtggaggaggcGCAGGCCCCAAGTGGAGCTCCAGGGAGCTGTACTCGGCCACTGGCGCCGCCCTCGGGGGCCCCGTGGTGCAGACTGTACCCCAGGGCAGGAAGGGCGGCGGGGGTGGCAGCAACCTGGGCAAGGAGAAGCTGGCCAGCCGGCTGCGTCAGCGGGAGCCCCTGAGCATGCTGATGATGTCCGAGAGGGAGATGGTGGACACCGAGCTGCTGTCCTACAGGGAGGACCTGGAGAACCAGGACTGCCTCACACACATGGACGACCTGCAGGTGAACATGATGACCCTGGCGGAGCACATCATCGAGGCCACGCCCGAGCGCATCAAGCGGGAGAACTTCGTGGCTGTGGAGACGACGCCCCTGGACAGCGCCGGGGTCAGCAACACCATGAGCTGGCTGGCCAGTTATCTGGGCGACGTGGAGCACCTGCCCAGTCTCATCCACTTGCGGTCCCTGTACAGTGAGCCCCTGACGCCCTCCTCCAACCCCAGCCTGAGCCCGGCAGGGTCCCCCCTGCGCGAGGGCCCCTTCGACAAGCCCGGCCTGCCCTCGCCCGCTGACTGGACTGACTTCCTGAGCGCCTCCAACAGCAAGGTGGAGCGGGACCTGGCGCAGCTCACCCTGTCCGACCCAGAGCAGAGGGAGCTGTACGAGGCGGCACGGCTGGTGCAGACCGCCTTCCGCAAGTACAAGGGCCGGCCATTACGAGAACAACAGGAAGTAGCAGCTGCAGTCATTCAGCGTTGTTACAGGAAGTACAAACAGTATGCACTTTATAAGAAGATGACGCAGGCCGCCATCCTTATCCAGAGTAAATTCCGCAGCTACCACGAGCAGAAGAAGTTCCAGCAGAGCCGGCGTGCCGCCGTGCTCATCCAGCAATACTACCGCAGCTACAAGGAGTTCGGCCGGCTGAGGCCCCACCGCCGAGCCACAGCCGCAGCGCTTGTCCAGCACAGACTCagAAGTAGTCTGCTCACCAAGAAGCAGGACCAGGCTGCGCGCAAGATCATGAGGTTTCTGCGCCGCTGCCGCCACAGagtgAAAGAATTGAAAAAGGACAGGGAACATGAGACCTTGCCGAAGAGCCCCCTCACGATGTGACATCACTTTTCcagacttttttcttttccgtTTATACCAGAGACATTTTacgagaggaaaaaaaacaaacaaacactcaaaacaaagggaaaaacaaaacaaaatgaattcaATGAACACACTGCGGTTGTCACTACGGTAGCCTCAACGGATTCTACTCTTGCGACTTAaaacagtgttattttttttcctttcttattcctttcttttgttttttcttttcggGGGAACGTGGCCAAGTCCCGCGGAATTTTAAACTCTACaaatgaaggaaagaaaaaaacaaacatttatcttCATGGcattttttgcactttttcatggattgatttttcttttctttttttttcgggagcaaaaaaaaaaaattatatatatatatatataatcctgaACTGGGGTCCTCGTGGTCCCTGGAGAGAGCTGGAGAGGGGATAGAGAAGCTCAAAGGTGGAAGGTCACTGAAAATATGGAATTGGTGCGGGAAATCATATTGGGACCTGCTTCTGATGATCATTTTATGGTTTTGCAAAAAGTGACTGatttgaagaggaaaaaaaagaagacatgAACCAAAAATAGTTGGCGTATATTCACGCTTTTTATAACCACGCACACTCCCGTACACTCCCAGGCAAACGCACCATAATCAAACATcttaatttactgttatttgGCCCTCGTCCCTGTCAGTCAATCAGAAAGGGGTGGGGCTGTATATGAATGTAGGCGGGGCGTGGGCACAGATGGGTGGGGCCTATCGAAC

Function

GO: NA

KEGG:

id description
K21596 CAMTA; calmodulin-binding transcription activator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151354 lncRNA downstream 41209 3091776 ~ 3092899 (-) True G120789
TU151321 lncRNA downstream 91608 3040548 ~ 3042500 (-) True G120760
TU151314 lncRNA downstream 113952 3008901 ~ 3020156 (-) True G120754
TU151294 lncRNA downstream 147329 2985573 ~ 2986779 (-) True G120746
TU151291 lncRNA downstream 180626 2953273 ~ 2953482 (-) True G120743
TU151382 lncRNA upstream 30104 3176584 ~ 3176844 (-) False AMCG00002091
TU151407 lncRNA upstream 261005 3407485 ~ 3466461 (-) False AMCG00002097
TU151417 lncRNA upstream 346476 3492956 ~ 3494050 (-) True G120841
TU151419 lncRNA upstream 353801 3500281 ~ 3502928 (-) True G120842
TU151418 lncRNA upstream 353844 3500324 ~ 3502928 (-) False G120842
AMCG00002094 mRNA downstream 5668 3113477 ~ 3128440 (-) False AMCG00002094
AMCG00002092 mRNA downstream 23200 3095720 ~ 3110908 (-) True AMCG00002092
AMCG00002090 mRNA downstream 44224 3087544 ~ 3089884 (-) True AMCG00002090
AMCG00002089 mRNA downstream 67195 3043648 ~ 3066913 (-) True AMCG00002089
AMCG00002083 mRNA downstream 172850 2956881 ~ 2961258 (-) True AMCG00002083
AMCG00002095 mRNA upstream 124 3146604 ~ 3147047 (-) True AMCG00002095
AMCG00002091 mRNA upstream 27025 3173505 ~ 3186353 (-) True AMCG00002091
AMCG00002096 mRNA upstream 127943 3274423 ~ 3274918 (-) True AMCG00002096
AMCG00002097 mRNA upstream 292565 3439045 ~ 3451247 (-) True AMCG00002097
AMCG00002104 mRNA upstream 349679 3496159 ~ 3498806 (-) True AMCG00002104
TU151364 other downstream 6164 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 129191 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 210887 2921252 ~ 2923221 (-) False AMCG00002085
TU151499 other upstream 567387 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 637756 3784236 ~ 3786544 (-) True G120927
TU151612 other upstream 1068235 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4690015 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 6685431 9831911 ~ 9833224 (-) True AMCG00002276

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044281 False 9500 mRNA 0.48 19 NC_007134.7 30061364 ~ 30431333 (-)