RNA id: TU151364


Basic Information

Item Value
RNA id TU151364
length 2398
RNA type TUCP
GC content 0.49
exon number 5
gene id AMCG00002094
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3113442 ~ 3128440 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGAAAGAAAGGCATCCACCACCCCTGCCCTCCATTTCCTAACACCCTTGTGCTTGAGTGATGGATAAACTCTTCACTGATACAgaccatgttttatttttagcctCGCTGATAATAAGCGCAGATTGGACGGGTCACATGCGCATCACGGGTGGGCAGCGCTGTGGGAGAGCAGCATGCAGAGACGGAGGCCATGGCTGAATACTGTGGTGCAGATAAAACCGGAAAATATTCATTATATCGTTGGCAATGCACGCATTTACTTTCCCTAAGAAGATAGCCATAAACACTAAACTTCTTTGAAATAAGAAAACACTGCAACTAAattcaaactttaaaaacatactCAACGAGAGCAGGCTAGTAAAGTtataatggaaaaaagaaaaacgcttGTAAGTGTCTGTTAGGCCCGTGTGCAAACAGGTCGttttcttgtagcgcagatgtccgcaggtctgcgcagctACACCAATGGCATCGcggggattgtgcagatctgcgcagaagtGCACAGCCCATTGCTGCCAGTGTAACCGGGTGCGCTGTCTCTTTAAATCCTCCAGCGGGCAGAAAGTTAGTGACACCGGCTGACTCCGCCGCAGCGCCCGGACTTCCCGCTTCAGGACCCGCAGACATGGCCGCCCCGGCTCCAGAAGGCTCTGGCCCCTCCACCGTGGCAGGGGGTAACCGCAGGCTGCAGCACACGCAGGCGCAGGTGGATGAGgtGGTGGACATCATGCGCGTCAACGTGGACAAGGTCTTGGAGCGAGACCAGAAGCTGTCGGAGCTGGACGACCGGGCCGACGCGCTGCAGGCCGGAGCCTCCCAGTTCGAGACCAGCGCCGCCAAACTCAAGAGGAAGTTCTGGTGGAAGAACTGCAAGATGTGGGCGATTTTAATAGCAGTTGTtttgatcatcatcatcatcatcatcgTCTGGAGCGTGTCGCCATAGAgcgggggagaggagaggaataAAGGTGCCGAAgcggagaggaggaggagacgcCCGCATGCCGGTGGCACCAATTTAACCTGCTGATTCCACAGCTCCTGTTTAGGTTGTTGTAAAATATACTGAACTggtggtgttgtgttttttttgttttgtttctttttaatgatgATTGTGACTGGACAAGTGGTCTACCATTCAAACGATACTCTGGTCTGTTTCAAACAGTGCCTGTAATTGTTCAACTTTTCCTTTAATTGAAAAGCCGACCGAGAGAGTCTCTGCCTCCTCCTGCCGAACGCATTATCACTCCGTTCAGGCCGAGCCGAGCTCAGATTCACTCCAGAGAAACGACACCCAGCACTCGGCAAGAGCATAGACCCGACCTGCGTGCCTAATCTCAATACATCGTTATGTAGGGTTGAGACTACAAGTGCCTGTTCATATTTGTGAATTCCAGCGAAGCATTACCAAATCTATAATTAGTGTGTTTTTTAACGTGTGCAAGCCTTCTCTTTGTTGTGATTTTTAAGCGAATATCTCCCTCCCGGTCTATTGACAGACTGTATTacgaatatgtgtgtgtaaaagccAAGTATTTATAATCACTAGAAGCTAAATTGAACCGGCTTGTTAATTTTGATAGATAGTGCAATCGCTCTATATTGGGTTCCGCTTGGGAACAACCGACCAGTTGCATTGTGGGTGGTCCCAAACTCTGGAGTGAGCTTGATTCGCATCGGTCCCAAGGGAGCTGCCAAATATCACCGCCAGTTGCCAAGTAATCCAGGGTGCCTTTTACACCGCGTTGCCTCAAGCGAGGAGAGGGCCAATCCAGAGACTGTCATCAGCTTAGTGTCCCTCGTTTCACTCCGCAGCAGCCATGTGCGTGTCTGCAGTGTGTAATGCACTCCACGCCCCCGCAGCTCCTCCAGTGATTTGAAAGTGAAGCCACGCCCCGATTGCTTTAATGCGGGCTCTCGTTTGTTTTAAGCTGATGCTAATCATGTGGTTTTCCGCTGATGCAGAGCTGGGTTCGGCTTTGTGTAAATCTGCATTCGCTGGATACTGAACTTACGCTTTTGGTTTAGTTCTCACTGCGCTTAATTACAGCGACACCTGAAGctcaatatatatgtgtataatctCAGTCTCTGGAGCGgtcagtctgtctctgtctgtctgtgtgcctgtcGTTCCCGATGCAGAAAGTGCCAAATCCCCCCCCCcgcacacgcacaaacacacccCTGTTCACTGTTCAACAAGCCCGGCCCTGGTCCATCACCGGAATGTGTTGTGCATTACAAACAAGTGCAATTAATAGATATTGTCGCCTTTAAACACTTAACTCCTTTAAGGTTGCTTATATTGTTGTCGCTTAATAAAATGATTCAAACTTTCCTCGTGGCCCTTGTCTGTTATTGGTCTGCGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151354 lncRNA downstream 20543 3091776 ~ 3092899 (-) True G120789
TU151321 lncRNA downstream 70942 3040548 ~ 3042500 (-) True G120760
TU151314 lncRNA downstream 93286 3008901 ~ 3020156 (-) True G120754
TU151294 lncRNA downstream 126663 2985573 ~ 2986779 (-) True G120746
TU151291 lncRNA downstream 159960 2953273 ~ 2953482 (-) True G120743
TU151382 lncRNA upstream 48640 3176584 ~ 3176844 (-) False AMCG00002091
TU151407 lncRNA upstream 279541 3407485 ~ 3466461 (-) False AMCG00002097
TU151417 lncRNA upstream 365012 3492956 ~ 3494050 (-) True G120841
TU151419 lncRNA upstream 372337 3500281 ~ 3502928 (-) True G120842
TU151418 lncRNA upstream 372380 3500324 ~ 3502928 (-) False G120842
AMCG00002092 mRNA downstream 2534 3095720 ~ 3110908 (-) True AMCG00002092
AMCG00002090 mRNA downstream 23558 3087544 ~ 3089884 (-) True AMCG00002090
AMCG00002089 mRNA downstream 46529 3043648 ~ 3066913 (-) True AMCG00002089
AMCG00002083 mRNA downstream 152184 2956881 ~ 2961258 (-) True AMCG00002083
AMCG00002084 mRNA downstream 167289 2935521 ~ 2946153 (-) True AMCG00002084
AMCG00002093 mRNA upstream 6164 3134108 ~ 3146480 (-) True AMCG00002093
AMCG00002095 mRNA upstream 18660 3146604 ~ 3147047 (-) True AMCG00002095
AMCG00002091 mRNA upstream 45561 3173505 ~ 3186353 (-) True AMCG00002091
AMCG00002096 mRNA upstream 146479 3274423 ~ 3274918 (-) True AMCG00002096
AMCG00002097 mRNA upstream 311101 3439045 ~ 3451247 (-) True AMCG00002097
TU151301 other downstream 108525 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 190221 2921252 ~ 2923221 (-) False AMCG00002085
TU151499 other upstream 585923 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 656292 3784236 ~ 3786544 (-) True G120927
TU151612 other upstream 1086771 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4708551 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 6703967 9831911 ~ 9833224 (-) True AMCG00002276

Expression Profile