RNA id: AMCG00002096


Basic Information

Item Value
RNA id AMCG00002096
length 192
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00002096
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3274423 ~ 3274918 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGTTAAAgccaCAGAATGGGTCGATGATACTGTACAACAGGAAGAAGGTGAAGTACCGAAAGGATGGCTACTGCTGGAAGAAGAGGAAAGATGGGAAGACGACGCGGGAGGATCACATGAAGCTGAAGGTGCAGGGAGTGGAGGTGAGGAGGGCGGGGTTCACTGGGGTGGGGGACGCACACTGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151382 lncRNA downstream 97579 3176584 ~ 3176844 (-) False AMCG00002091
TU151354 lncRNA downstream 181524 3091776 ~ 3092899 (-) True G120789
TU151321 lncRNA downstream 231923 3040548 ~ 3042500 (-) True G120760
TU151314 lncRNA downstream 254267 3008901 ~ 3020156 (-) True G120754
TU151294 lncRNA downstream 287644 2985573 ~ 2986779 (-) True G120746
TU151407 lncRNA upstream 132567 3407485 ~ 3466461 (-) False AMCG00002097
TU151417 lncRNA upstream 218038 3492956 ~ 3494050 (-) True G120841
TU151419 lncRNA upstream 225363 3500281 ~ 3502928 (-) True G120842
TU151418 lncRNA upstream 225406 3500324 ~ 3502928 (-) False G120842
TU151429 lncRNA upstream 260904 3535822 ~ 3536525 (-) True G120849
AMCG00002091 mRNA downstream 88070 3173505 ~ 3186353 (-) True AMCG00002091
AMCG00002095 mRNA downstream 127376 3146604 ~ 3147047 (-) True AMCG00002095
AMCG00002093 mRNA downstream 127943 3134108 ~ 3146480 (-) True AMCG00002093
AMCG00002094 mRNA downstream 145983 3113477 ~ 3128440 (-) False AMCG00002094
AMCG00002092 mRNA downstream 163515 3095720 ~ 3110908 (-) True AMCG00002092
AMCG00002097 mRNA upstream 164127 3439045 ~ 3451247 (-) True AMCG00002097
AMCG00002104 mRNA upstream 221241 3496159 ~ 3498806 (-) True AMCG00002104
AMCG00002102 mRNA upstream 228128 3503046 ~ 3510980 (-) True AMCG00002102
AMCG00002103 mRNA upstream 252434 3527352 ~ 3533819 (-) True AMCG00002103
AMCG00002108 mRNA upstream 366264 3641182 ~ 3661770 (-) True AMCG00002108
TU151364 other downstream 146479 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 269506 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 351202 2921252 ~ 2923221 (-) False AMCG00002085
TU151499 other upstream 438949 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 509318 3784236 ~ 3786544 (-) True G120927
TU151612 other upstream 939797 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4561577 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 6556993 9831911 ~ 9833224 (-) True AMCG00002276

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU501534 True 11919 lncRNA 0.37 1 CI01000306 10978441 ~ 10990359 (+)