RNA id: AMCG00002098


Basic Information

Item Value
RNA id AMCG00002098
length 2007
RNA type mRNA
GC content 0.66
exon number 13
gene id AMCG00002098
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3533814 ~ 3542177 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaagGTGCCAGTCTCCAACAGTAAAGCCAGGGGGCAGCGCATGGGCGAGGgcaagaagaggaaaaagaagcCGGCGTCACAGATGGAGACCTGTGCCCTGAGTCCCGTCTCGGCTTTGGGCACCAAGTACTGCCAGGCGGCCAGCAGGGGGCACCCGAGCCTCAAGAGACTGAAACACCGCGCCAAGCCCGTGCCATCCCGAGATGGGGACTGTCCCCCGGCGGCCCGTCCCGGAGCGAGCGCCGAGGGCAGATCGCACGCGCACACCAACGGGGGTTCCAGGGTGAGGGCCAGAGACGCCTCCCCGTCCCTCTCGCCCGCCCCCTCTCGCCAGCGCGACTCCACGAACTGGGAGGAGTCGGACCAGTGGTCATCCTACGCCGAGATGGCGCAGCAGAACGGCCTGACCAGCTCTGGCACGGAGCCCAGCGCGGAGGACTCGGCCGACATGGAGGACGGCACCCCCTGGCCGGCGTACCAAGCTGCCTGGGACGAGGACAGGAACCGGACACTGCTGGTCATGACGCCTGGGCAGAAAGAGCGCCGGCTGGAGGCCAAGTCCCTCGTCCGCAAGTACCTGCCCACAGAGGCGTGGCGGGGCCTGAGGAGCGGCGTCACCTCCAACTCTTGCCTGGTCCTGCTGGAGCCGCTGGACACCCCTCTGACCCGCTTCCTGAGCAGCCTGCCCGAGCACCGCCAGCTGTTCGGCTTCAGCGCGAAGGAGCGTGCTGTCCAGCCAGTGACCCTGGACTGCCCCCTCTCGGCCATCGGGATGCTCCCCCTGCAGGGCGGCGGGGGTCTGGTGATGTCACAGAGTTACCGGAACGCCATCGACCAACTGGTCAGCGCCTGTCGAGAGGACTCAGACGGCTGTCCGGTGATCCTGGTGTGCGGGAGCAAGAACATGGGGAAGTCCACCTTCAACAGACACCTCATCAACACGCTGCTCAACCAtacTGTCAGTGTGGAGTATCTGGAGTGTGATCTGGGACAGACTGAGTTCACACCCCCCGGCTGTCTGTCTCTGCTCTCTATTACAGAGCCTCTGCTGGgtgtgCCCTTCACTCACCAGCGCTCCCCAGACAAGATGGTGTTCTACGGGGAGAGCTCCTGCGAGCGGGACCTGGACCGCTACATGGACTCGGTCAAGTTCCTGTGGCGCTCCTACAGGAGAGAGACGCCCATCGTCATCAACACTATGGGCTGGGTCAAAGGGTTTGGATTCCAGTTGCTGGTGGACCTGATCCGCCTGCTGTCCGTCACTCATGTGCTCAGTCACGGAGACTCCACCCAGTTCCCCGCCCTCAGCCACGCCAATCTGAGCTCCGCCCCCGGCTGGATCACCACGCCgcggggtcagaggtcagccCTGGCTGCCGAGGGGGAGGAGCCCGATGACCCCCTGTCGGCCGAGAGTCACACACTTATCAGCGTCCAGTCGGAGTATGAGGGAGCGGGGGAGGCCCAGAACACGACGTACCGCAGCAACGTGCTCCGGGACCTGTCCCTGCTGGGATACTTCAGCCAGCTGCAGGACCCACAGCCCGGCCCCGTGCGGCCCCTGCACTGCATCACCCCGTACCAGgTGCCGATGTCTGCGGTGGCTCTGCGGGTGACGCACTGTGACGTGTCCCCGGCCCACGTGCTCTACACGGCCAACGGCAGCCTGGTGGGGCTGTGCTACCTGGCGGAGAAGGTGGGGGGTACTGGGGGTCCAGTGCTGCTCTCTCACATACCCGTCTGCCAGTGCCTGGGCTTCGGCGTGCTGCGAGGGGTGGACATGGCCCGGGAGCTTTATTACGTGGTGACCCCCCTGGACCCCTCCCTCCTGCGACGGGTCAACTGCCTGCTAGTGGGGGGGGTGACGCTGCCACACACCCTCTACAGGACACAGACGGGCGTTGAGGGTGAGCGACCCTACGTCACGCTGGACTACAGCTTCGAGATCTCGGGCGCGGGGAAACTGCGGGTCCGCAAGGGCCTGAGGAGGAGGGAGCACCTGTAG

Function

GO: NA

KEGG:

id description
K06947 GRC3, NOL9; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151401 lncRNA upstream 32965 3500337 ~ 3502927 (+) True G120827
TU151397 lncRNA upstream 41825 3491280 ~ 3494067 (+) True G120823
TU151360 lncRNA upstream 419468 3113450 ~ 3116424 (+) True G120794
TU151340 lncRNA upstream 434846 3100278 ~ 3101046 (+) True G120779
TU151339 lncRNA upstream 435750 3099607 ~ 3100142 (+) True G120778
TU151531 lncRNA downstream 246539 3788716 ~ 3791941 (+) True G120928
TU151573 lncRNA downstream 398279 3940456 ~ 3940716 (+) True G120961
TU151589 lncRNA downstream 544982 4087159 ~ 4087472 (+) True G120974
TU151687 lncRNA downstream 1038677 4580854 ~ 4581879 (+) True G121044
TU151688 lncRNA downstream 1039796 4581973 ~ 4582280 (+) True G121045
AMCG00002101 mRNA upstream 12047 3519315 ~ 3523845 (+) True AMCG00002101
AMCG00002100 mRNA upstream 46259 3479844 ~ 3489633 (+) True AMCG00002100
AMCG00002086 mRNA upstream 448599 3085012 ~ 3087293 (+) True AMCG00002086
AMCG00002087 mRNA upstream 495869 3025064 ~ 3040023 (+) True AMCG00002087
AMCG00002088 mRNA upstream 531174 2995378 ~ 3004718 (+) True AMCG00002088
AMCG00002099 mRNA downstream 19441 3561618 ~ 3562267 (+) True AMCG00002099
AMCG00002107 mRNA downstream 47190 3589367 ~ 3594982 (+) True AMCG00002107
AMCG00002106 mRNA downstream 64708 3606885 ~ 3618192 (+) True AMCG00002106
AMCG00002105 mRNA downstream 86274 3628451 ~ 3642159 (+) True AMCG00002105
AMCG00002112 mRNA downstream 166015 3708192 ~ 3710721 (+) True AMCG00002112
TU151290 other upstream 576417 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 1595076 1924022 ~ 1940816 (+) True G120518
TU150681 other upstream 2543128 693622 ~ 992764 (+) True AMCG00002019
TU150678 other upstream 2851566 682670 ~ 684326 (+) False AMCG00002019
TU151873 other downstream 1676653 5218830 ~ 5223498 (+) True AMCG00002152
TU152254 other downstream 3044477 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 3044477 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 3851623 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 5211549 8753726 ~ 8762079 (+) False AMCG00002245

Expression Profile