RNA id: AMCG00002099


Basic Information

Item Value
RNA id AMCG00002099
length 198
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00002099
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3561618 ~ 3562267 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTCTCTACTGGAAGAAGCGGGGGGCCTACGAGCTGGAGACCCTGCCTGCCTCGCTGACGGAGCTGGGCCTGGGGGCCGAGCGCTACTCCTGGGCCTCCTCTCTGGATGTCATCCATGACCTGTGCGTTGGATTTCCTTCCATCTGGGCTCTTAAACGCAGGGTTCGACTCGCGATGGACTTCAAAAAGTTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151401 lncRNA upstream 58691 3500337 ~ 3502927 (+) True G120827
TU151397 lncRNA upstream 67551 3491280 ~ 3494067 (+) True G120823
TU151360 lncRNA upstream 445194 3113450 ~ 3116424 (+) True G120794
TU151340 lncRNA upstream 460572 3100278 ~ 3101046 (+) True G120779
TU151339 lncRNA upstream 461476 3099607 ~ 3100142 (+) True G120778
TU151531 lncRNA downstream 226449 3788716 ~ 3791941 (+) True G120928
TU151573 lncRNA downstream 378189 3940456 ~ 3940716 (+) True G120961
TU151589 lncRNA downstream 524892 4087159 ~ 4087472 (+) True G120974
TU151687 lncRNA downstream 1018587 4580854 ~ 4581879 (+) True G121044
TU151688 lncRNA downstream 1019706 4581973 ~ 4582280 (+) True G121045
AMCG00002098 mRNA upstream 19441 3535892 ~ 3542177 (+) True AMCG00002098
AMCG00002101 mRNA upstream 37773 3519315 ~ 3523845 (+) True AMCG00002101
AMCG00002100 mRNA upstream 71985 3479844 ~ 3489633 (+) True AMCG00002100
AMCG00002086 mRNA upstream 474325 3085012 ~ 3087293 (+) True AMCG00002086
AMCG00002087 mRNA upstream 521595 3025064 ~ 3040023 (+) True AMCG00002087
AMCG00002107 mRNA downstream 27100 3589367 ~ 3594982 (+) True AMCG00002107
AMCG00002106 mRNA downstream 44618 3606885 ~ 3618192 (+) True AMCG00002106
AMCG00002105 mRNA downstream 66184 3628451 ~ 3642159 (+) True AMCG00002105
AMCG00002112 mRNA downstream 145925 3708192 ~ 3710721 (+) True AMCG00002112
AMCG00002110 mRNA downstream 155730 3717997 ~ 3730830 (+) True AMCG00002110
TU151430 other upstream 22064 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 25190 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 602143 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 1620802 1924022 ~ 1940816 (+) True G120518
TU150681 other upstream 2568854 693622 ~ 992764 (+) True AMCG00002019
TU151873 other downstream 1656563 5218830 ~ 5223498 (+) True AMCG00002152
TU152254 other downstream 3024387 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 3024387 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 3831533 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 5191459 8753726 ~ 8762079 (+) False AMCG00002245

Expression Profile