RNA id: AMCG00002102


Basic Information

Item Value
RNA id AMCG00002102
length 1512
RNA type mRNA
GC content 0.64
exon number 7
gene id AMCG00002102
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3503046 ~ 3510980 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATATTAGCGTGGAGCGGCCGGTGTCTGCTGCTGACGTCACGGATTGGGTCACTCCGCGCTGGGTGGGTTCAGAGCAGCCCAGTCGAGCTGCTTCAGGGCCGGAGGAGAGAGCCGTCATCTCCCAGGACAGCGCGCAACTTCGGGGGGACGTTTCGCTTCATTCCTCCCTCCGTAACTTGCAATGCCCGGCGATACTGCTGGGGCATCCTCCAGAGGCGAACTCTGACCGGTGTCTGCCGCCGGTCCCGACACTCCCGACTcggaaaAGGTTAACCAGCCCTGCCTTCTTTATTTCCCGGCGAGCCCATACGCCGTGCCCGGGACTTCAGCACCGCGACCCCTCTGTGTGCGATGGAGCTCGTTTAACTCCCCCTGAAACGGGCTCAGAAAGCATCGCCCTGCCTGCTGCCGGGAGCACCCAGCCCAGGGACAGAGCTCCGGCTAAGTGCCGCTGCCTGGTTTTTCTGGACCGGTCCAACACCCATTTTTCTCTCCTGTGGCACCGGTTCCCTCCGCTCGCCCGTCCCCGCGTCGCGATGGACACATCCTCCTCCTGCACGCTGGACTCCGAGGACTACAGTCCCAGTTACAAGAGGCGCCGGACGGTGGAGGATTTTAACAAGTTCTGCACCTTTGTGTTGGCCTACGCAGGTTATATTCCATACCCTAAGGAGGAGACTCCACTGAGGACGAGCTCCAGCCCCCCCAACAGCACGGGCAGCACGGTGGACAGCGATGGCTGGGAGCCGCCACGCTTCGGCAGCGACCTGCACCCTGGCGGCAGCCTCTCCGTGACCCCCAAGAACCGGAGGAGCTTCGGGAGCTTCAAGCGGGCCGAGAAGGCGTCCGACCCTCTGGCGCCCCTGATGAAGCGCTCCAAGTCGGCGGGCTTCCTGCTGGATGGGAAGAAGACGGACaaggtgaagaagaagaagaaaaagctgaAGATGAGGGAGTCGGGGGAGCGGCCGGCAGCTCCCGCGGTGACGGTGAAGGCCGAACCGGAGCTGCCTGCAACGGACCGACCGATCAAACAGGAGCCGGCGGATGACTTCAGCATCTCCTCGGAGGCGGTGGACGGCACGGAGACGGGGAGAGACCCCGAGCCTGCCTCTCCCGGGATCTACTCCCCCGCCGACGGTGCCGCCGGCCGGCCCGACTGGGAGGTCCGCTTCAAAGAGGAGCCGCAGCCCGACAGCCCCAGCTCGGACTCCTCCGCCTACGAGGGGCTTGAGGACGCAGAAGGGGAGCAGGATGACACGGAGGCGCCAAGACGGGAGGCAGTTCCCGGGAAGAGGACGGTGATCCGACAGGGGAAGCAGCCCTTCGCCGGGAGACCCATGATCGAGTGCAACGAGTGCAACACCTGGATCCACCTGTCCTGCGCCAAGATCCGCAAGTCCAACGTCCCCGAGGTCTACGTCTGCCAGAGGTGCAGGGACTCCAAATTCGACATCCGCCGCTCCAACCGGTCGCGCATGGGCTCCCGGAAACTCTTCCTGGACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151419 lncRNA downstream 118 3500281 ~ 3502928 (-) True G120842
TU151418 lncRNA downstream 118 3500324 ~ 3502928 (-) False G120842
TU151417 lncRNA downstream 8996 3492956 ~ 3494050 (-) True G120841
TU151407 lncRNA downstream 36585 3407485 ~ 3466461 (-) False AMCG00002097
TU151382 lncRNA downstream 326202 3176584 ~ 3176844 (-) False AMCG00002091
TU151429 lncRNA upstream 24842 3535822 ~ 3536525 (-) True G120849
TU151434 lncRNA upstream 27782 3538762 ~ 3540826 (-) True G120853
TU151516 lncRNA upstream 189512 3700492 ~ 3704364 (-) True G120914
TU151590 lncRNA upstream 576128 4087108 ~ 4087418 (-) True G120975
TU151682 lncRNA upstream 1056459 4567439 ~ 4569294 (-) True G121039
AMCG00002104 mRNA downstream 4240 3496159 ~ 3498806 (-) True AMCG00002104
AMCG00002097 mRNA downstream 51799 3439045 ~ 3451247 (-) True AMCG00002097
AMCG00002096 mRNA downstream 228128 3274423 ~ 3274918 (-) True AMCG00002096
AMCG00002091 mRNA downstream 316693 3173505 ~ 3186353 (-) True AMCG00002091
AMCG00002095 mRNA downstream 355999 3146604 ~ 3147047 (-) True AMCG00002095
AMCG00002103 mRNA upstream 16372 3527352 ~ 3533819 (-) True AMCG00002103
AMCG00002108 mRNA upstream 130202 3641182 ~ 3661770 (-) True AMCG00002108
AMCG00002113 mRNA upstream 257175 3768155 ~ 3777213 (-) True AMCG00002113
AMCG00002116 mRNA upstream 278078 3789058 ~ 3794546 (-) True AMCG00002116
AMCG00002118 mRNA upstream 306842 3817822 ~ 3824170 (-) True AMCG00002118
TU151364 other downstream 375102 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 498129 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 579825 2921252 ~ 2923221 (-) False AMCG00002085
TU151499 other upstream 202887 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 273256 3784236 ~ 3786544 (-) True G120927
TU151612 other upstream 703735 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4325515 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 6320931 9831911 ~ 9833224 (-) True AMCG00002276

Expression Profile