RNA id: AMCG00002104


Basic Information

Item Value
RNA id AMCG00002104
length 1113
RNA type mRNA
GC content 0.68
exon number 5
gene id AMCG00002104
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3496159 ~ 3498806 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtggcAGGATCTCAAGTGCGTGTCGGACAGAGCATGCGCACACCGCGCTGCTGGATCAGACACGGAGCAGACCCGCAGTCGGACTTTAATTGCCCGCAGCCGAGGCACCGGGTCGCCTGGCGGACAGAGACGGCAGCCCGTCTGCGCAGCTCGGCCGAGCACAGGGCCGATACACCGGGACCCGCACACGTCGCCCGGCTGGAGCTCAACACACCGCAGACCGTCTCTTCCGGGGTTGCACAGGGCCGCGTCACCGGCCGCCGGGCTCGGGGGTCTTGCTTGTGCCCCCTGCCGCTGCGCTTGAGGGGCGCCGGCCGAAGACAAGTACGCACAGAGGAGATGCCCAAGAGTTGCTCTGCCTATAACTGTACGAACAGGTACAGCAGCAAGAACCCGGATCTCACCTTTCACAGGTTCCCCCTCAGCAAGCCCACCGTGCTGAAGGAATGGCTGCACAACATCGCCCGTGACGACTTCCAGCCCAACCGGCACATGGTCCTCTGCTCCCAGCACTTCACCCCCGACTGCTTCAACAGCTACGGCAACCGCAAGAACCTGCTGTGGAACGCCGTGCCCACCGTCTTCTCCTTCCCCCCGCTCAGCTCCAAGGCGAGGCTCGCGTGCGGCCCCTTCCTCAGGAAGAAATCTCGCAAGAGGCTGCGGGCCGAGTCTCCGGCGGTGGTGCCGCGGTGGGAGGAGCTCTGGCTGGAGGAGGTGGGGCCGCAGCAGGAAGAGGTGGGGCCAGAATGCCGGGAACAGCGGGAGGGGCCTGAGCTCTGGCCCTGCGACCACAGCTACTCCCTGGCAGAGCCCGGCGCGGTCAAGGCCCGTCTCTTCAGCACCCTGGAGGCCAACGAGCGGCTGCGCAAGAGGTTGAAGGTCAAGTGCGAGGTCATCCGCAAGATGAGCCAGAAGCTGCAGGCCGCGCACCGGGAGCTGGGCACCCTGCGGGCCGAGCTGAGCCAAGCCAGGGCCGGACCGGGGCAGGCGCCGCCCACGCGCACTCCAGAGACGGCAGGGGAGCGGCCCGTGGACCTGAGCCGGGCCGAGGAGGACCATGGACCGGAGGGGGCCCCGAAGAGCCCCAAACAGGAGCTGTGCAGCCAGGACTGA

Function

GO: NA

KEGG:

id description
K23203 THAP1_3; THAP domain-containing protein 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151417 lncRNA downstream 2109 3492956 ~ 3494050 (-) True G120841
TU151407 lncRNA downstream 29698 3407485 ~ 3466461 (-) False AMCG00002097
TU151382 lncRNA downstream 319315 3176584 ~ 3176844 (-) False AMCG00002091
TU151354 lncRNA downstream 403260 3091776 ~ 3092899 (-) True G120789
TU151321 lncRNA downstream 453659 3040548 ~ 3042500 (-) True G120760
TU151419 lncRNA upstream 1475 3500281 ~ 3502928 (-) True G120842
TU151418 lncRNA upstream 1518 3500324 ~ 3502928 (-) False G120842
TU151429 lncRNA upstream 37016 3535822 ~ 3536525 (-) True G120849
TU151434 lncRNA upstream 39956 3538762 ~ 3540826 (-) True G120853
TU151516 lncRNA upstream 201686 3700492 ~ 3704364 (-) True G120914
AMCG00002097 mRNA downstream 44912 3439045 ~ 3451247 (-) True AMCG00002097
AMCG00002096 mRNA downstream 221241 3274423 ~ 3274918 (-) True AMCG00002096
AMCG00002091 mRNA downstream 309806 3173505 ~ 3186353 (-) True AMCG00002091
AMCG00002095 mRNA downstream 349112 3146604 ~ 3147047 (-) True AMCG00002095
AMCG00002093 mRNA downstream 349679 3134108 ~ 3146480 (-) True AMCG00002093
AMCG00002102 mRNA upstream 4240 3503046 ~ 3510980 (-) True AMCG00002102
AMCG00002103 mRNA upstream 28546 3527352 ~ 3533819 (-) True AMCG00002103
AMCG00002108 mRNA upstream 142376 3641182 ~ 3661770 (-) True AMCG00002108
AMCG00002113 mRNA upstream 269349 3768155 ~ 3777213 (-) True AMCG00002113
AMCG00002116 mRNA upstream 290252 3789058 ~ 3794546 (-) True AMCG00002116
TU151364 other downstream 368215 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 491242 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 572938 2921252 ~ 2923221 (-) False AMCG00002085
TU151499 other upstream 215061 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 285430 3784236 ~ 3786544 (-) True G120927
TU151612 other upstream 715909 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4337689 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 6333105 9831911 ~ 9833224 (-) True AMCG00002276

Expression Profile