RNA id: AMCG00002107



Basic Information


Item Value
RNA id AMCG00002107
length 1164
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00002107
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3589367 ~ 3594982 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCAGCTGCAGAAAGTTGAGCTGTTTATCCAAGACAAGCTTATTGACTCCGAGCAGAGCCTGCTTAGTAAGGCAGGGCTCGGCGGCAGGGCTTTGGCCCCTCTCGGTGGCTGCGTCGGGTCCCTGCGGCAGCCTGCCCTGGGTGGGGGCAGCGTGGGCGATGATCTGAGCTCACctGTGTGCCACCACCCCGACTGCCAGGACCTGAACAGCAAGAGCCCGCTCAACCTATGCGAGTCATGTGACTCCCGCTGCCACCAGAACGAGACGGACGCCATGCACTTCGACCGGCACCCCCGTTTCGACCTGCAGCCGCAAGgTTCGATCCTGGCGCGCAACGTGTCCACGCGCTCCTGCCCCCCCCGCACCAGCCCTCCGTCGGacctggaggaggaggatgggggGGGTGATGACAAGGGGGATCACAAAGCGACCGGGATTAAGCTGACGAAGAAGAAGCCGCGACGCCGGCACACAGACGTGAGTTCGGGCCCCTCACACACACCTAGGGCTCTGTGTCGCCCCCTGCAGGACCCGAGCAAGGAGTGCTTCACCCTGAAGTTCGACCTGAATGTGGACATTGACATGGAGATTGTGCCGGCCATGAAGAAGAAGACGCTACGgGAGGTCCTGGGCCCCGTGTTCGAGCGCAAGGGCATCAAGCTTTCCCAGGTGGACCTGTTCCTCGACCAGTCCAACACCCCACTGTCCCTCAACTTCGAGGCCTACCGCTTTGGGGGCCACTACATCAAAGTGAGAGcGAAACCTGGAGACGAGCTGAAGGTAGAACAGGAGGTGAAGGACCTGCGCTCCCTCAGTCTGCCCAACATGAAGCCCTCGCCCGGGCAGTCCCCTTACATCCTCTCCCCTAGCATCGACCGGCTGGAGCACGGCTCTCTGGGTCGTCGGGACACCGTGGATCTGCTGCCACGAGGAATCTACACCGAGTGTCTGCAGTGGGCTCTGCACCGTGCACAGGTGTTGGTGCCTGCTCCTCTTTGTGCTCGGGGTGGTATTTGCCTAGCGGGACTTGCTGTTGGCGTAGAAGTCATCTCCATCTTTCGGCACGTTCTTGTGAccgtttggtttgttttcttccccacAAACACGCAAGAAAACGAAACGGTCAGGCTGTCGCAAGGGCTCTCCGCCGGCATGTCGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151401 lncRNA upstream 86440 3500337 ~ 3502927 (+) True G120827
TU151397 lncRNA upstream 95300 3491280 ~ 3494067 (+) True G120823
TU151360 lncRNA upstream 472943 3113450 ~ 3116424 (+) True G120794
TU151340 lncRNA upstream 488321 3100278 ~ 3101046 (+) True G120779
TU151339 lncRNA upstream 489225 3099607 ~ 3100142 (+) True G120778
TU151531 lncRNA downstream 193734 3788716 ~ 3791941 (+) True G120928
TU151573 lncRNA downstream 345474 3940456 ~ 3940716 (+) True G120961
TU151589 lncRNA downstream 492177 4087159 ~ 4087472 (+) True G120974
TU151687 lncRNA downstream 985872 4580854 ~ 4581879 (+) True G121044
TU151688 lncRNA downstream 986991 4581973 ~ 4582280 (+) True G121045
AMCG00002099 mRNA upstream 27100 3561618 ~ 3562267 (+) True AMCG00002099
AMCG00002098 mRNA upstream 47190 3535892 ~ 3542177 (+) True AMCG00002098
AMCG00002101 mRNA upstream 65522 3519315 ~ 3523845 (+) True AMCG00002101
AMCG00002100 mRNA upstream 99734 3479844 ~ 3489633 (+) True AMCG00002100
AMCG00002086 mRNA upstream 502074 3085012 ~ 3087293 (+) True AMCG00002086
AMCG00002106 mRNA downstream 11903 3606885 ~ 3618192 (+) True AMCG00002106
AMCG00002105 mRNA downstream 33469 3628451 ~ 3642159 (+) True AMCG00002105
AMCG00002112 mRNA downstream 113210 3708192 ~ 3710721 (+) True AMCG00002112
AMCG00002110 mRNA downstream 123015 3717997 ~ 3730830 (+) True AMCG00002110
AMCG00002111 mRNA downstream 149866 3744848 ~ 3761328 (+) True AMCG00002111
TU151430 other upstream 49813 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 52939 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 629892 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 1648551 1924022 ~ 1940816 (+) True G120518
TU150681 other upstream 2596603 693622 ~ 992764 (+) True AMCG00002019
TU151873 other downstream 1623848 5218830 ~ 5223498 (+) True AMCG00002152
TU152254 other downstream 2991672 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 2991672 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 3798818 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 5158744 8753726 ~ 8762079 (+) False AMCG00002245

Expression Profile