RNA id: AMCG00002108


Basic Information

Item Value
RNA id AMCG00002108
length 5260
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00002108
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3641182 ~ 3661770 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGGTGAGCAGCTGCACTGCTGTCTCTGTGCGGACGAGAGACGAGAGACgagcctgcctgcctgcctgcctgcctgcctgcctgcctgcctgcggAGGAGCAGCTCGCCGCCTGTGCGCAGCCTCGGCCCGTGTGTGGAAACAGCGCCGCCGCTCACCGGACGGACCCGGCGCGGAGACTCGCCCGCCCGGCCGCGCTATGACCGCCGTGTCCCGGGCAGCCCTGGCGCTGCTGCTCTCCGCCGCGCTGCTGGCGCTCAGCAAGGGTTACACGGTGCCCTACGTGCCTGACTCTGAGGAGAACTGCAAGGATGGCGAAACCGAGTACTTCAACAAGGAAGCCCAGCACTGCTGCAGCAAATGTCCGCCAGggacacatttaaaacaacaatgcagTGCATCCAGAGACACGGTCTGTGAACCCTGTCGAGAGGGCACCTACACGGACCGCTGGCACTACCACTGGAACTGCCTGAGATGTGAGAAAAAATGCACCGCGCTAGGCCTGGTGGAGGTCCAGACCTGCATGACCACATCCAACAGAAAGTGTGTGTGCCCGGTGAACACCTACTGTTCTTTGAGGTTCGGTCTCAACAAGTCCTGTGAAAactgcagtcctttctccatCTGCCCAGCCGCCCACGGTGTCTTGGTGAATGCGAATGAAGACTCTGATGTCAAGTGCGCGCCCTGCCCCACCGGGACCTTTTCTGCTACGCCGTCCAGCACCGAAGCCTGTCAGCCCCACACTGACTGCGCCTCTCTGGGAAAGCGAGCACTGACCCCGGGCAATGCCACCGCTGACGCAGAGTGTGGGGACTGGGTCAGAGTGATGCCCGACACCGCCACCCTGAGTGGACATCCAGCCCGAATCACGACGCCCCCTAGCCCCGCCGGGTCCTCCAGCGCTCAGCCTGACGACGTGCTCCCGGTCGCAGTGTGCCCCGAGGTTGCGGGCCTGACATCGCCGTCGTGTGTCAAGAAGCACATCCCTAAAATCATCGCAGGGGCAGCGTGTCTCCTGGCCGTGTTGGCAATCGTCATCTTCGCCTGCATCCTCGTCAAGCGGCACAAAGCTCGCCAGAACCGGGGTTCCGATGCAGAGGAGTTCCAGGATCTCAAGCTCCCCCCCGAGCTCCTCCAGCAGAACCCCTCTTATGTCCATCCCCCCAATCCAGAGCAGCAGTGCCTCCTGGGAGAGAAAGACTCCAGCAGTCCGTCCCTGTCCTGCGCCTCCTCCCAGTCGGATTCCAGCTACAGCTCGGGAGTGGGGTCCATACAGCAAAACGGCCAGGAGGGCCTGTCCCTCTGCAAGAGCCCAGAGACCCCGTCCACCACCAGCCCTCAAATGCAGGTGAGCATCGAGGCCACCATCAAATACCACCTGCAGACAGCGGGGTCCTGCTGCGCACCGCCGGCGTCCGGGGGGGGCGGCCGCAATCCCGACACGCAGAGCTCCGACTCTGGCGTCCCCCTCTCCCAGGAGGAGACCTACATCAACTTGCAGCCGTCCCAGTGCGAGGAGGACAAAGACGCCCGTCTGTCCGAACAGGAGAGCAAGGTGTGCTGAAGGGGCCGGGCCGAGCCAGGACAGCGCCAGCGCATAACACCCGCAGAGCGAGGCTGGAGCACGTCAGCTGCACTCGGGACACCTGGGAGATGCACCTCGTGTGGGATTAGTGAGGGTCACTGTGGCACGCTCACTCGTGCTCTCTTTGCTGTTcttaatatatatctatatattaattttgaattctGCCATCTATGGGCACCGTAACCCCAGATTTTCAGGGGCTGCCAGCCAGGAGGCCGATGGGTGACGAATGGTATTTAAAACCCCGCTTGTGTCCCAGTTGAATGCTGAGGTCACCATGGCCCCTGTTGCCATGACCCTTCACTGCCAGGCACCCAATGTTTAGAGGGCCTCGTTCAGGGCCACCCCTCTTCCGTGACACAGCGTAGAGGAGAGTGAGGGAATGCAGTGCATCAGCCCTGGGGAGCAAGAGAGAACGCCTGACTATACTTTTGTCTTCCCCACGCCTGCCTCTTCCCCCGTCTGTCGAAGGCCGGGCCCTCTGGTGCATGACTGTGGCCCTTCAGAGCGAGCACTCATAATGCTCTAGACTCTGGTTTCACTGTGCACAGTAACGCTGACTCACACTGAGATTTACATTCCTGTCCGGCGAGTTTTGGGAAACTATTTAAAGCCGGCAGACGCCCACACACAGCTCTCAGCGTCTCTTATTTCTTTACCTCCATTTCCAGGAACACggagagaaaaaagaacagaCTGGCCAAAAGGAACAGTGACAGAGAAGGAGTTTCTGGTGCAGCGACTGAGGCAGGGAAAGCACCGTGTGTTAACATGGTCTTTTTTTGCGAGCAACCATGATGATCGCTGATCGTTACACAGTGTGTCCTCTGTGCTCGGGTAGATGCTGGTTGTGAACGTGTTGTTTGACATTATCTCTCTGCTCAGGTATTTATGCACTGAACTGTGAGAAGGAAGGAGGAACTGTACGTATCGGAAATACACCCTCATCTCCCAGGAAGGCGGTCGCTGACATTTTCTTAGAAAGAGATGCACATATATGACTCGAGAGTTAGTCAGGGCCACAGAGGAGTCCGTCTGTTCAAGGAAACCAAGCTGGGTGTTaagaagcaagaaaaataagacaaaGCCCTTCTGTACTGCCTTTGACCAGTCatgactgtatttatttatacagggCCTTAATGAACTAAAAACAACACCGAGGTCAAACCGCAAAGACAAAACAACTTAAGCCAGTatgtacagacagacagtcacacacacacacatacgtttGGTTCCCAGACCAAATacttgttatttttctaattgaggagtttgttttatacttttgtaAATGACAACCACAGATATTTCAGAGAAGCTGAACTCTGTGTGCAAGTCTTCCCTTACAGTatatgtgttaatgtgtgtttatctgAAACATTATAATTACAGATCTGTCTTTACGTGTATAGAAACCCAGCTGTTCTTGATGAGCACATATTTGTGTAAAGAGTTTTGAAAAgcattgtatttctgtgtgtttgtcagcCGTTGTAGTCAAGAGTCCAAGACCTGTTTATGCAACAAGGACTCCCCCTAGTGTTCAGTGTAAAAATGACGAGCTGTTTTCACACTACAGCATCTGCTCCCGGGTTGAGTGGCCCCAGGGTGGCCCCTGGATGACCCTCCCCTGAATTCAGCCCTGTTTGCGTTCACATTGGCCAAGCGCTCTAATCACGGGTTACGATTCACTTGCTTTTAATTTCACCCCGAGGTGAAGCTTCATCCCGGGTTGGAAACATCAGCCTCGTCTCTACAGCGGCAGTTCACCGGCTTCAGGGTTTCGTCTCAGGTTGACAGTGCCAGTGTGAAAGCGCTTGATTTGGGACCCGGGTTCAACTGtctagtgtgaaagcagctcAAAGCAAAGCCCTGAAGACATGAGCTCTTCCAAACGCACGGCGAGATGGAtgttgtgtgtaaatgtttaaatagagGGACTGGTGTGCTGTCACTAGGACTGCGATTTTGTCTCAGAGATAATTGTGTTTACCTGcctgccttttaaaatattccccCCAACTTCTTCTTAATTAGACTCCCTTGAAAGCTAATAATTGGGCAGTACGTAACTCCGCAACACTGCAACTGTTTTTttactgattattattctgttGAATTGATTAATCAGTCACAGTGCAACACGTGTTCTACATTTCTAAAACGCACCTCCGTAGCACAAAATGCTTCAACGTATTTTGCTCATTCTGTCTACAGGGCAAATTTACCAAAAAAGGAAGAAACGGCATCAGCTACAGATGTTGTAAAACCCAATTATCTCCATGAAACAATGGCAGCACCAGCTCTGACCCACAGCAGCTGTATTGTGGTAATCACGTGTGTGATGCTGAATGTTAACTACGAATGTCGATGTCACTGTTGGCACAAATGAATGTAGACTGTGGTGCCAGTTCAATTATTGTTTCTGAGGGAAATAACATGTCGGCAGCAGTGCATCCTGATTGGCTGAGGGAGGCGTTTAATAAGGTGGCATTGTTCTGCACTATTTTGCTGTATTCTCATAAGGAATAGTAGTGAGAAATGAATCTGTATTTTACGCACTGCTGCCCATGCGTTCTGTCTGAGGCCTTTCATATTTGCAAGTTAAATTCTATATTGTCATAttgaaatcattttattatacaagttttattttcatactgcaTTAAAAGCACAAACATATCAAATACCACAAtacctgttttctttttcttttccattcacAGTCAATCATTAGGCTCCGTTTACATGACACATGTATACCAAATCTCAACTATTCGGAACAGTAGGTTCTGTTAAATATGAGAACtaacagttatttaatttaataggaGATGTGCCTTTATTTCATCACTGCAGGCCACAGTTATTCAGATGTTCGGTACACCCATTGTATGCAATCGAGGCGCTTTGTAATTCACTCACTTCTTTTAAAATCCTCCATAAAATGAAGTGTCATTATCAGTAACAGAAAGAAAACCACTTATACAGCTATAAAATAAGACATCAATCATTGTCTACAGATTTCTGTGTTACACAGTACATACACattagaataaatacaatattcactttatatttatatatatatatatatgcgcatatatataaaaactgggTTCTAAACATTCAAAGTGATCGCTGGCACAAACAGCAGGGGTGCGTGTAATAATGCATTGTGAATCTTCCACAGAGCGCAGACACTGAAGCGGCCGTGTGTTTGGCGTGTTCTGTGTCACCGTCTGTTGCTCTTGGTTTGTCCGTGGTGTTTCTCTTTGATGTCTTGATAGGAACACTGACTCATTGATTTCCAGCTCAATGATACCGTTGCCATCGATTTGTTTTGAACACACAGCAGTTCAGCACGTCTTCACAAGATGAGCATCTCTTTCGTTACCCTGAACAGGAAGTTGGTGCCGAGTCGATGTGACTGTTTTTGTTCAGACAAAGTTGgtcagctttttattttcttttaaatctctctgtggttgtttgcgtgtgtgtgagagagagagagtgtttgcacttctgtgtgtttgtacttcgtgtgtgtgtgagagagacggGTTTGTGGGAAACCTCACAGAGGGATGATTttagtgtgcaggaaatgtgcaGCTGCCACTTGCCTTCTGACAGGCTCAACGTTGAAGACTTGGC

Function

GO: NA

KEGG:

id description
K05141 TNFRSF1B, TNFR2, CD120b; tumor necrosis factor receptor superfamily member 1B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151434 lncRNA downstream 100356 3538762 ~ 3540826 (-) True G120853
TU151429 lncRNA downstream 104657 3535822 ~ 3536525 (-) True G120849
TU151419 lncRNA downstream 138254 3500281 ~ 3502928 (-) True G120842
TU151418 lncRNA downstream 138254 3500324 ~ 3502928 (-) False G120842
TU151417 lncRNA downstream 147132 3492956 ~ 3494050 (-) True G120841
TU151516 lncRNA upstream 38722 3700492 ~ 3704364 (-) True G120914
TU151590 lncRNA upstream 425338 4087108 ~ 4087418 (-) True G120975
TU151682 lncRNA upstream 905669 4567439 ~ 4569294 (-) True G121039
TU151778 lncRNA upstream 1054822 4716592 ~ 4722181 (-) True G121111
TU151835 lncRNA upstream 1448832 5110602 ~ 5116017 (-) True G121151
AMCG00002103 mRNA downstream 107363 3527352 ~ 3533819 (-) True AMCG00002103
AMCG00002102 mRNA downstream 130202 3503046 ~ 3510980 (-) True AMCG00002102
AMCG00002104 mRNA downstream 142376 3496159 ~ 3498806 (-) True AMCG00002104
AMCG00002097 mRNA downstream 189935 3439045 ~ 3451247 (-) True AMCG00002097
AMCG00002096 mRNA downstream 366264 3274423 ~ 3274918 (-) True AMCG00002096
AMCG00002113 mRNA upstream 106385 3768155 ~ 3777213 (-) True AMCG00002113
AMCG00002116 mRNA upstream 127288 3789058 ~ 3794546 (-) True AMCG00002116
AMCG00002118 mRNA upstream 156052 3817822 ~ 3824170 (-) True AMCG00002118
AMCG00002117 mRNA upstream 164406 3826176 ~ 3834827 (-) True AMCG00002117
AMCG00002121 mRNA upstream 249428 3911198 ~ 3918187 (-) True AMCG00002121
TU151364 other downstream 513238 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 636265 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 717961 2921252 ~ 2923221 (-) False AMCG00002085
TU151499 other upstream 52097 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 122466 3784236 ~ 3786544 (-) True G120927
TU151612 other upstream 552945 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4174725 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 6170141 9831911 ~ 9833224 (-) True AMCG00002276

Expression Profile