RNA id: AMCG00002111


Basic Information

Item Value
RNA id AMCG00002111
length 2625
RNA type mRNA
GC content 0.58
exon number 22
gene id AMCG00002111
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3744848 ~ 3761328 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCAGCAAGTTGCCTTGATGGTCAAAGTGAGCGGCAGAGCCTGCAGGAGCGCAGATCTACCTGTCCTGTCCGGCTCtgctctgtctctcagtctAGTTCACCCCTCGaccacttttctctctctctctctctctctcttcagagtGACAATAATGGGTAAATCGGAAAGCCAGATGGACATCGTGGAGAAATCGCGCAGGGCGGGCAGGCGGCGCTGCAGCGCGGCGGAGATCGGGCTCtcggtgctgctgctgctggcgaGCGGCGCGCTGGCCGGACTGCTGCTGCTCTACACTGCGGCCACAAGAGAGCCCACGTACCGTGCCAGCGTGAATAATGTGTGCACAACGCCAGGCTGCGTCACTGCAGCTGCCAGGCTCATCCAGAACATGGACCCCGGGGCCGAACCGTGCCAGAACTTTTACCAGTATGCCTGCGGGGGCTGGCTGAACCACCACGTCATCCCCGAGACCAGCTCCCGTTACAGCGTCTTTGACATCCTGGGAGACGAGCTGGAGATCATCCTGAAGGGGGTGCTGGAAACAGAGAGTGACCAGGACAGGGAGGCCTTCAGGAAAGCCAAGACTCTGTACCACTCCTGCATGAACGAGAGTCTTATAGAGAAGCGTGACTCGCTGCCACTGATGAAGCTCATCGATGCCATTGGAGGATGGCCCGTGGCCTCCGAGGACTGGAACAGCACCACAGAAGAGCAGTGGAGTCTGGAGGACACCCTGGCCACTCTGAACGCCCGCTTCCACAAGAAGGTGCTGGTGGACCTGTTCGTGTGGACGGATGACCGCGACTCCAGCCGCCACATCATCTACATCGACCAGCCTGGATTGGGAATGCCGTCCCGGGATTACTACTTCAACGACGGGAACTACAAGCGGGTGCGTGACGCCTACCTGCAGTTCATGGTGTCGATCGCACGCATGGCCCGCGAGGACAGGAACCTGACACAAGACGAGGAGCTGGTTCTGGAGGAGCTGACCGGCGTGCTGGAGCTGGAGACCGACATCGCCAGCGCCACCTCGCCGGCAGAGGAGCGGCACGACATCACCCTGCTCTACCACAAGATGTCCCTCAGTGAGGTGCAGGAGCGCTTCCACCTGAACGCCTTTAACTGGACGAAGTTTGTCCAGGGCGTGCTGTCCAGTGTCAGTATCGATGTGCAGGCCCAGGAGGAAGTGGTGGTGTATGGCGCCCCCTACCTACAGAAACTGGGAGACGTCCTCTCCAGACACCCTGTCAGGACTCTGCAGAACTATCTGACCTGGCAGCTCATCATCGACAGGGTCAGCAGCCTGAGCCGTCGCTTCAAAGATGCCAGGGCCCACTACAGGAAGGCACTGGACGGGACGACCGTGGAGGAGGCCCGCTGGCGGGACTGTGTGCGCTACGTCAAGAGCAACATGGAGAATGCGGTGGGCGCCCTGTACGTCCGGGAGACCTTTGCCGGAGAGAGCAAGCGCATGATGAGCGAGCTGATCAGTAAGATCCAGGAAGCGTTTGTGGAGACGCTGGACGAACTGCGCTGGATGGATGATCAATCCAAGGAGAAGGCAAGAGAAAAGGCTCTGGCAATCAAAGAGCAGATCGGCTATCCCGACCACATCCTCGAGGAGCAGAACCACAAGCTGGACCAGGAGTACGCACATCTGAACTTCAGTGAGGAGAACTACTTCGAGAACATCCTGCAGAACCTGCACGCCGGGGCCCAGAAGAGCCTGAGGAAGCTGAGAGAGCGGGTGGACCCAGACCTGTGGATTATCGGAGCCGCTGTGGTCAACGCCTTCTACTCCCCCAACAGAAACCAGATAGTTTTCCCAGCTGGCATCCTGCAGCCTCCCTTCTTCagccagcagcagctccaggccCTGAATTTCGGCGGGATCGGCATGGTGATTGGTCACGAGATCATCCATGGCTTCGATGACAATGGTACCCAAAAACCCACACCCCCCGACACCTCCGCCCCCATCACGTTCTCTCTCATTCACTTCCACGACTCCCTCACTTCACTTCCCTTCTCTGCTGTTCTGTGCTCTATAGCTACAGAGGTAGTCAACAAGCGGGGGCGGGGGTTCAGCTCAGTGTGTGGAGAGACAGGTGCAAAAATCAAATCCTGCTGTGTCTCAAAAACAGGGAGGAATTTCGACAAGGACGGGAACATGTTTGATTGGTGGAGCAACTATTCCGCCATGCACTTCAAGGACCAGTCCCAGTGCATGGTCAACCAGTACGGAAACTTCAGCTGGAAGTTGGCCGGAGGACAAAACGTCAGTGGGATCAGCACGCTGGGAGAAAACATCGCTGACAACGGAGGAGTCCGACAAGCCTATAAGGCCTACCTCAAgtgggtggagagagagggggaggagccACATCTGCCCGGCTTGAACCTCGACCACAAGCAGCTGTTCTTCCTCAATTTCGCACAGGTGTGGTGTGGCTCCTACCGGCCCGAATACGCCAGCCAGTCTATCAAGACGGACTCACACAGCCCCCTGGAGTACAGAGTGATCGGCTCTCTGCAAAATTTCGGGGCGTTCGCGGAGGCCTTCCACTGTACGCGGGGCAGCCCCATGCACCCAGAGGTGAAGTGCCGGGTATGGTAG

Function

GO:

id name namespace
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
K08635 MMEL1, NEP; neprilysin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151401 lncRNA upstream 241921 3500337 ~ 3502927 (+) True G120827
TU151397 lncRNA upstream 250781 3491280 ~ 3494067 (+) True G120823
TU151360 lncRNA upstream 628424 3113450 ~ 3116424 (+) True G120794
TU151340 lncRNA upstream 643802 3100278 ~ 3101046 (+) True G120779
TU151339 lncRNA upstream 644706 3099607 ~ 3100142 (+) True G120778
TU151531 lncRNA downstream 27388 3788716 ~ 3791941 (+) True G120928
TU151573 lncRNA downstream 179128 3940456 ~ 3940716 (+) True G120961
TU151589 lncRNA downstream 325831 4087159 ~ 4087472 (+) True G120974
TU151687 lncRNA downstream 819526 4580854 ~ 4581879 (+) True G121044
TU151688 lncRNA downstream 820645 4581973 ~ 4582280 (+) True G121045
AMCG00002110 mRNA upstream 14018 3717997 ~ 3730830 (+) True AMCG00002110
AMCG00002112 mRNA upstream 34127 3708192 ~ 3710721 (+) True AMCG00002112
AMCG00002105 mRNA upstream 102689 3628451 ~ 3642159 (+) True AMCG00002105
AMCG00002106 mRNA upstream 126656 3606885 ~ 3618192 (+) True AMCG00002106
AMCG00002107 mRNA upstream 149866 3589367 ~ 3594982 (+) True AMCG00002107
AMCG00002109 mRNA downstream 17969 3779297 ~ 3786544 (+) True AMCG00002109
AMCG00002115 mRNA downstream 35927 3797255 ~ 3815714 (+) True AMCG00002115
AMCG00002114 mRNA downstream 77035 3838363 ~ 3842411 (+) True AMCG00002114
AMCG00002119 mRNA downstream 125159 3886487 ~ 3897924 (+) True AMCG00002119
AMCG00002124 mRNA downstream 222342 3983670 ~ 3987843 (+) True AMCG00002124
TU151430 other upstream 205294 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 208420 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 785373 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 1804032 1924022 ~ 1940816 (+) True G120518
TU150681 other upstream 2752084 693622 ~ 992764 (+) True AMCG00002019
TU151873 other downstream 1457502 5218830 ~ 5223498 (+) True AMCG00002152
TU152254 other downstream 2825326 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 2825326 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 3632472 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 4992398 8753726 ~ 8762079 (+) False AMCG00002245

Expression Profile