RNA id: AMCG00002113


Basic Information

Item Value
RNA id AMCG00002113
length 1697
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00002113
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3768155 ~ 3777213 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCTCTTCCCACTACGCGTGTGAGACAGACACAGCAGGAAGGTTGTTAGAAGCGTTTTGCTGTAACATTCAtagattttaattgtatgtatatatatatatatatatatttaattgaagaaaaatgaGCGCTGTAGACCTGGCTAAAATCGGCGCGAATGTGCTGAAGAATGCTGCGACTGGAGAGatgGTGCAGCTGCAGTCTCTGTGGCAGGACCAGGCCGTCGTCCTGTTTTTCTTGCGTCGGTTCGGCTGCCAGATCTGCCGCTGGACGGCCGCGGAGGTCAGCAAGCTGAAGGAGGACCTGAGTGAGAACGGCGTGGCGCTGGTGGGCATCGGGCCCGAGGAGACCGGCCTTCGGGAGTTCAAGGAGGGAGGCTTCTTCAAGGGCGACGTGTACATTGATGAGAAGAAGCAGTGCTACAAGGATCTGGGCTTCAAAAGgtacGGTGCCCTGAGCGTGGTGCCGGCGGCCCTGGGGAAGAAAGTGCGCGACGTTGCCACCAAGGCGAACGCCCAGGGAATCCAGGGAAATTTCTCTGGCGATCTGCTGCAGAGTGGAGGCATGCTCATCGTGGACCGAGGTGGGGAGAAGGTCCTGCTGCACTTTGTCCAGGACTCCCCCGGAGATCATGTCCCCCTGGAGACCATCGTCCAGACTCTGGGCATCTCCGCCGAGGTGCAGCCAGGCCAGAGACCTCAGTGCAACGACGATGTGTGCACACGATAAGAGCTGATGCCCAGACGGCGCTGTGTGGAGGACACCTCGTTCCCCAGCTGCGTGGAGCCGCTGTGAGGCCGGGCTGCACTCATTCCCGAAGGAAGGACAACTGGGCTTcccttacattttctttctactATTATATATTTGATGCTCATCCATGACTTTGATAATGTTCTTACAAAATGGTGGTTACTTAGATTGGGGCTTTTGGAATTAATCAAAAGATAACGTGCggtatttatagaaatcagtaTAACCTGGTTAGGAATCCGTTAGTTTCCTTGTACCTGATTGGTTGGGAAAGAGTGAATGGAATTGTGGCCTCTCATTTGAAGAACAGAACCGGTCCTTTTTGCTGGTCAGCTCACTGCCAAGAAACAAAGTGAACATGAGAGCTCTACATAACTGCTCTGCGGTGCTAATATAAGGACGTGTGTACAGATAACAGTTATAACGAATTAAAGTGATGCACTAACAagacaatcattttatttttccactgtttGGGATGCGTTTGACCATCAAGTCAACGCTCCCACGTCCAAGAGGCTCTGAATGCTTCTGTGAACAAATCCGGTGTGCAGATCTGTTTGGGTCCCTGACTCACGGCTTCAGCTCGTGCCAAGGAGAGTGATGGCGTCGTCGCGTTTGGGGTTTGCCGGCTGGCCGTGCATACACTTCAATTGCAGGGACCGAGCAACCAATGCGAATGAGACAAATAAAAGGAACGAACATAAGAAACCCATTTCTCACTGGCTGAGTGTGTCCTGTCTCCCACAACCTCCGGGGAGGCGGCCTGTGTTTCAGGTCTCTGTAATCTGTCTCACTTACAGGCTGGAGGCCCAGTGCCAACCCCCCCCCATTCTCTGATTTTGGCGGTTAATTTTTAACTCTTCAGCTCCATGTTTAACCGCTTTACAAATGtgattgtaaaataatgtaataaaggGGACAGGAGCAGGGGATTGTGGG

Function

GO:

id name namespace
GO:0001516 prostaglandin biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005829 cytosol cellular_component
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K15717 PRXL2B, FAM213B; prostamide/prostaglandin F2alpha synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151516 lncRNA downstream 63791 3700492 ~ 3704364 (-) True G120914
TU151434 lncRNA downstream 227329 3538762 ~ 3540826 (-) True G120853
TU151429 lncRNA downstream 231630 3535822 ~ 3536525 (-) True G120849
TU151419 lncRNA downstream 265227 3500281 ~ 3502928 (-) True G120842
TU151418 lncRNA downstream 265227 3500324 ~ 3502928 (-) False G120842
TU151590 lncRNA upstream 309895 4087108 ~ 4087418 (-) True G120975
TU151682 lncRNA upstream 790226 4567439 ~ 4569294 (-) True G121039
TU151778 lncRNA upstream 939379 4716592 ~ 4722181 (-) True G121111
TU151835 lncRNA upstream 1333389 5110602 ~ 5116017 (-) True G121151
TU151836 lncRNA upstream 1350825 5128038 ~ 5137006 (-) True G121152
AMCG00002108 mRNA downstream 106385 3641182 ~ 3661770 (-) True AMCG00002108
AMCG00002103 mRNA downstream 234336 3527352 ~ 3533819 (-) True AMCG00002103
AMCG00002102 mRNA downstream 257175 3503046 ~ 3510980 (-) True AMCG00002102
AMCG00002104 mRNA downstream 269349 3496159 ~ 3498806 (-) True AMCG00002104
AMCG00002097 mRNA downstream 316908 3439045 ~ 3451247 (-) True AMCG00002097
AMCG00002116 mRNA upstream 11845 3789058 ~ 3794546 (-) True AMCG00002116
AMCG00002118 mRNA upstream 40609 3817822 ~ 3824170 (-) True AMCG00002118
AMCG00002117 mRNA upstream 48963 3826176 ~ 3834827 (-) True AMCG00002117
AMCG00002121 mRNA upstream 133985 3911198 ~ 3918187 (-) True AMCG00002121
AMCG00002122 mRNA upstream 142020 3919233 ~ 3920341 (-) True AMCG00002122
TU151499 other downstream 51903 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 640211 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 763238 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 844934 2921252 ~ 2923221 (-) False AMCG00002085
TU151529 other upstream 7023 3784236 ~ 3786544 (-) True G120927
TU151612 other upstream 437502 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4059282 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 6054698 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 6064882 9842095 ~ 9853075 (-) False AMCG00002279

Expression Profile