RNA id: AMCG00002114


Basic Information

Item Value
RNA id AMCG00002114
length 2343
RNA type mRNA
GC content 0.59
exon number 6
gene id AMCG00002114
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3838363 ~ 3842411 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGAGGACATCTGGGTTGAGTCAAAGGGAGATTACTACATTGGAGGCATATTTCCAGTTGAGCATCTAGACAAGAATCTAGACAAGTGTGCCATGCTGCCTGGATTTGTGATGGCAGAGGCAATGAGGTTTGCTATGCAGGAGATCAACAACTCCACCACCCTGCTGCCCAATGTCCGACTGGGCTACAGAATGCTGGACAGCTGCAGTGACGCCTGGGGCATCCACTCCATGCTGCACTTCCTGTCTCCACAAGACACCACAGTGCTTGACCTGCAGAGGAACTTTTCAGAGCTGCAGCCCAACGCCGTTGCCATCATCGGACAGGGGATGAAGCCACTGGACGATGCCATGACTGGGCTGCACCAGATAGTGCAAGTCCCCGTGATCAGTTACTATTCGGTGCCGCTCACCCTGATGGCGAGGTACCGCACCCTCTTCAGTGTGGTGCCAGCTATGGAGAACCAGCTCCTTGCCATCCAGGCCTTGCTGCTGGACCTGGGCTGGCGGTGGGTGGCGATTGTTGGCAGCAAGACCAATTACGGACAGGAGAACATCAGGACTCTGTACAGTCAGGTCACGGGTGAGGACATCTGTGTGGCATATTTCGGTACCATCAACGATACAGAGGTGGGCCCGATCATCAGCAAGATTGTGGACACCCGTGTCAACGTCACCGTGATCTTGGCCGAGCCGGAGACGGTGAGAGCCTTCTTCGCTGGGGTCATGGAGCAGAACGTGACAGGCAAAGTGTGGGTGGCCAGCAGCTCCTGGTCCTCCGCTTTCCAGGAGGTGTCGGTGCCCAGTAGCATAGGAACGGTGCTGGGGGTGGGCGAGTGGGGCACCAGTCTGCCCGGGTTTCAGGATTTCTTGCAGGCCTCTCTCCCCAATCAGCCTCCACTCTCTACAACAGCCTCCCCCTCTGACTGCCAGGGTTCTGATGCGGGGAAGATCCTGAACATGACGGGGACGCAGGGGGCCTTCAGTGTGTATGCGGCTGTCCACTCCGCAGCCCAGGCCCTGCACTTCGCCCTGGGCTGCCAGAGGTCTGCCTGTGACCCAGGGCCTGTCTACCCCAAAGAGgtgaTGGAAGCCGTGGAGAGAATCAACTTCTCCATTGGGGACCACGTTATCAAATTTGGGGTTAGCGGGACCATGGAAGCAAGGCTGTCTCTGGTGTCGTGGGTGTGGAAGAGTGACGGCACCGTGTCTGCGACCACCGTGGGGCATTACCACACCGGGTCCAAGGACCTGCAACTCCACAAGGGGGAGATTGCCTGGGGGGGGGTCCTTGGATCAAAGGTGCCAATGTCGGTCTGTTCACAAGAGTGCCGGTCGGGTGAGAGAAAAATCCTAGGCACCCATCATTGCTGCTTCCTGTGTGATCCCTGCCCCTGGGGGACCTACCTCAACTACACGGACGAGTACTCGTGTAAGATGTGCCCGGCGGGGCAATGGGCGCCCCCAGCCAGTGAGGCCTGCCTTCAGAGGAGCACGGAGTATCTGGACTGGAACAGCGTGGCCGGGCTGGCGTTGATGTGCGTGGTGTCCACGTCCCTCCTGCTCAACGTGGCCATCGCCGCGCTCTTCCTGTTGCACTGGCAGAGCCCCATGGTGCGGGCGGCGGGGGGGTGCATGAGCCTGGCCATGCTGGTCTCGCTCATCGTGGCCTACAGCAGCATCCTGGCCTATAGCTTTAGACGTCCGACCCAAGTCTCCTGTGCCGTCGGGATCACCCTCTTCTCCATATgcgtctctgtgtccctgtcctGCATGGTGGTGAAGTCCATCCAGATCCTCTGCATCTTCAAGTACTCCACCCGCCTGCCCCACTTCTACAGCTACTGGGTGAAGAACCACGGCCCCCCGCTGACCGTGCTGGGGCTCACACTGCTGGCCACGCTCATCCAGGGCGCTCAGCTCCTCTGCCTTCCGCCCAAGGTCATGGAGGCTGAGGACACCTTCTCGAACGCCACCATTCTCATGTGCAACCAGGATCAGCAGTGGGCAGACAGTATCTTTAAGCTCCTGATCGCCATGCTGGCCTTCTCCCTCTCCTACATGGGCAAGGGGCTGCCCAGGGCCTACAGCGAGGTCAAGTACATCGccttctcctccctcatctTCATCGTGGGCTGGATCACATACCTGACCACGCACTTCATGGAGAGCGGCACCATCTCAGCGGCCCTGCAGGTGGCGGGCATGCTGGTCAGCCTCATGGGCATCAGCGCCGGCTACTTCCTGCAGCGCTGCTTCATCATCCTGTTTCACCCGGAGCAGAACACCACAGCCTACTTCCAGAGCATGATCCAGGAGTACACCATGAGTGGCCATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151531 lncRNA upstream 46422 3788716 ~ 3791941 (+) True G120928
TU151401 lncRNA upstream 335436 3500337 ~ 3502927 (+) True G120827
TU151397 lncRNA upstream 344296 3491280 ~ 3494067 (+) True G120823
TU151360 lncRNA upstream 721939 3113450 ~ 3116424 (+) True G120794
TU151340 lncRNA upstream 737317 3100278 ~ 3101046 (+) True G120779
TU151573 lncRNA downstream 98045 3940456 ~ 3940716 (+) True G120961
TU151589 lncRNA downstream 244748 4087159 ~ 4087472 (+) True G120974
TU151687 lncRNA downstream 738443 4580854 ~ 4581879 (+) True G121044
TU151688 lncRNA downstream 739562 4581973 ~ 4582280 (+) True G121045
TU151783 lncRNA downstream 906717 4749128 ~ 4752334 (+) True G121114
AMCG00002115 mRNA upstream 22649 3797255 ~ 3815714 (+) True AMCG00002115
AMCG00002109 mRNA upstream 51819 3779297 ~ 3786544 (+) True AMCG00002109
AMCG00002111 mRNA upstream 77035 3744848 ~ 3761328 (+) True AMCG00002111
AMCG00002110 mRNA upstream 107533 3717997 ~ 3730830 (+) True AMCG00002110
AMCG00002112 mRNA upstream 127642 3708192 ~ 3710721 (+) True AMCG00002112
AMCG00002119 mRNA downstream 44076 3886487 ~ 3897924 (+) True AMCG00002119
AMCG00002124 mRNA downstream 141259 3983670 ~ 3987843 (+) True AMCG00002124
AMCG00002125 mRNA downstream 177817 4020228 ~ 4021143 (+) True AMCG00002125
AMCG00002126 mRNA downstream 189723 4032134 ~ 4033552 (+) True AMCG00002126
AMCG00002123 mRNA downstream 211383 4053794 ~ 4057620 (+) True AMCG00002123
TU151430 other upstream 298809 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 301935 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 878888 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 1897547 1924022 ~ 1940816 (+) True G120518
TU150681 other upstream 2845599 693622 ~ 992764 (+) True AMCG00002019
TU151873 other downstream 1376419 5218830 ~ 5223498 (+) True AMCG00002152
TU152254 other downstream 2744243 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 2744243 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 3551389 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 4911315 8753726 ~ 8762079 (+) False AMCG00002245

Expression Profile