RNA id: AMCG00002116


Basic Information

Item Value
RNA id AMCG00002116
length 3295
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00002116
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3789058 ~ 3794546 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTATCAATTGTGTATTTCTTGCCTCCGTGTGATAGACAGTATGTGTTCAGCTGGTTCAGTGTGCATCACCTGTTACCCCAATATCTGGCACATTGTTGGCCATGTTTTTGATCACGCTAAACTCCAGATGATAAAACGACTGGGTCCCTTTAGGCCATGTAGGCTAAGGAGATAACAATACTAAAATATGTAAAGTGTAAAATCAATAAGCAGCTTATCAGCACAGAGACAGTTGAGATCACAATCCtgtacaacactgaaaacaGTATTTAGATCATCTGCAAAAAAAGAATGGAACTCATGCACTAAAATCAAACGTAGACAATTTAAATTTTACAAGGCTTTTCTGTATTCTTGAACGTTACATCTAGGAACTGCACAATGTGGTTTCTACCTACCACAAGATATCTTTGAGGTTTATTTCTCTCAGAATGAACTATGCAAAGGCAGACCTTTTAATGAATAAAGGTACCTCATTGATGTTTGAAGTTTCCTCTATTGTCCTTCCACTGTGCTGCTTGACCTATAGGCACACATAATATATCAGGATACAGCACGCTCTCTCTAGACAAAATACCAGATTTCTCCCAGAAAAGATCCACTCTGCTTTTGCCTGGAAACTGCAAGATGGACCAGACTGTAACTTTCTTATTGGCTCCCCCCTAAGATTGGACAATTCCTTCTCCCCTGACGTGGTTAACCCCCCAACGTCCTCTGATGGTGACGCAGTGTGCCAAGACAAAAGCCAGTGGCCGGGGATTCTGCCGAATGGTCTTGTTTAAAATGCCGGTGCGCAGGgcttgtgcttttctttcttatCTCCCCAATGAAGTGGGAGCCTGCAGGGTCGATTGCTCCGTGTTACCATGAGAATGGCTCGGCCTGACCTCCTGCCGCTCCCTCCCCTGCCCTCGGTGCTGCCACGGCGCTCCTGTGAACGGGGCAGCCTGATTGATGTTGCCACGAACTGCCCTCCTCAACACCCATGGCCTGCACTTCCCCTGTCTCTGCCTCCCTTGTTTACTTCCCATCTctcacgtttttttttcttctgtgttaaACAGATCAGTCAGTTGCAGGTCAGTGGGTGTCCCCTCAGACCGAGGCCATAATGATGCTTTTCTTGTCACATTTTTGGTGACCCCCGCCACACACCCTCCAAACCACCTCTTCATGCACATCTTTGGGCACGCAGAAGGCCTCGAGCAACTAAGGGACGAGTGCATTGATCAAGAACAAAGTTTTCACAGCTTGTTTCTTTTCagtattgttttcctttaaactCTCGAACGTCTTAAGGAAATACAACAGAGAACTGAAATCAACGCCCAACAAGCGTACATCCCTCAAGGATGTCAATGTAAGAGCTGAAATTGATGGAAACATAACGATGGAGAACCTGTTTCGCTTCAGACACTAGGCCTAGATTTTGACTGTCCAAAGAGCAGACCCCACTAGTTGGCTTCATCTCTCGGCCCTTTACCACAATTTGTGTAGACACTAGGGGAGATGTGTATTCAGGGAATGAAGTTGCTCTATTTTCCAGAGTTTCGAAGCACAATGATATAAATTAAAGATACAGACTGCTACATGCTTATACTTACAGTTAATTGTAAAGCACAACCAAATGTTCAGAAGCTGTATAATAGGAAAAACACATAAGACATGTACAGAAGCTCTGTattcaatataataaacaatatgcGTCAAtactaattatttgtttatttgcatgaaGAATTGTTTTggaggagaaaaatgaaaaggcgCAAAGTGTTTAATACAATTCAAGGACGGGCCAAGAGAGAGGAGGAGCTCCCTTATGAAATAGTTAACCTGGCCCGCGTTGAAACCCGACACCGCACTTCCCAAAACTGCCAACAGAAAAGAGAGCGAATGAGCAACAAAGACACGACAACGTGCACTTGGGTGAACTCTCAATGCATGATGCACGAAACCAGTTACACATGAAAAagccaagaaaaaatacaaaatcaaatatataaatctcaTTCGTTTTCATTTCACAGTCTTAAGTCAAAAGCGACGAAAACAACCCCCCGTCCGATCAGAGTTGATGCATTAGGCAATCTAACGAGCGTAGGGAAATAAAGtcagatatataatatatcagaGCTCCGTGCACCGAGCTGCAGATGCAATGTGCGGCTCTTCACGGGGGAGGACGCGTCAACCTCATGTCAACATCACTACCGTGTTTACGAGAGCCGCGCatcaatgaataataaactgtatactaaatatatatgtatctatttcTTATTGACGCATCCGATACCCAATAGAGACAAAGGGAACAGTTTCTCTTGTGTAGACGAGAGGGTATTGTTCAGCGATGACCGACATTTGAATTAGCCAATGAGAAGCTCGAAAAGGGGCATCGTTTTGCTGTTAATGAGGGGGCGTGTCCTTGCATGTACATCGACGAATagacaataaatatacacaggGGGCGTGTCCTAGAAGGCGGGACTCTGGGGCGTGATCGACGTGCGAGTCCTCCAATGGGCGCAGGCGAAAGTCCCGTCCACCAATCCCGAGCCGCCTCGACCTGCCCCCTCAGGAGGACGCTATTTAATTCTCAGGTTTGAAGCGCCGTGTTTCACTCCTCTCCTCGCCTCCGAGTCGCCAGTTTCCCATCCGAGACAGGGGTCGCTGCCTTCCGTACACCCGAAGAAAAGAAACCATTAATTACCACCTTCTTCTGTCTGGGAGGCTTGTTTTCTTCGTCCGCACACAATGGCTGATACCGCAGTTGACACGACCACCGCCACCCCCGAGGTTACCCCAAAGGAcctgaaggagaagaaggaggttGCCAAGGAGGAAGTGGAGAAGActgaggagaagaaggaggagaagaaggaagagAAGAACGGCAGCGCAGACGCACCTGCCAACGGCACGGAGGCGAACGGTGCCGACCACGGCGAGGAAACCCCtgaggatgaggaggaagacGAGGAGGGAAAAAGTGGAAACCGCAAAAAAGCAGAAGACGGAAAACGGCGACTCCACAGAGGCCGAAGCGAAAGCCTAGAGCCCGGCCCGCCCTCGCCGCCCGCTCTGTCCGCCTGGTCACCCCGACCCAGTAGAGGTTGTGCTTTTGTGAAcTCGGTCCTGCCGAGGAGGATTGTGCGGTTAAACGCCGGCCGCATATTTGCCCGGCGAAGCTCCAGTACGACTGCATGGATGGCGAACGCGGCCACGAGGGTCTCTGCCTCGCAACAAGCGAAACCCGCCCAGTCCAGAGACCCCGGCCGCGTCTATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151516 lncRNA downstream 84694 3700492 ~ 3704364 (-) True G120914
TU151434 lncRNA downstream 248232 3538762 ~ 3540826 (-) True G120853
TU151429 lncRNA downstream 252533 3535822 ~ 3536525 (-) True G120849
TU151419 lncRNA downstream 286130 3500281 ~ 3502928 (-) True G120842
TU151590 lncRNA upstream 292562 4087108 ~ 4087418 (-) True G120975
TU151682 lncRNA upstream 772893 4567439 ~ 4569294 (-) True G121039
TU151778 lncRNA upstream 922046 4716592 ~ 4722181 (-) True G121111
TU151835 lncRNA upstream 1316056 5110602 ~ 5116017 (-) True G121151
TU151836 lncRNA upstream 1333492 5128038 ~ 5137006 (-) True G121152
AMCG00002113 mRNA downstream 11845 3768155 ~ 3777213 (-) True AMCG00002113
AMCG00002108 mRNA downstream 127288 3641182 ~ 3661770 (-) True AMCG00002108
AMCG00002103 mRNA downstream 255239 3527352 ~ 3533819 (-) True AMCG00002103
AMCG00002102 mRNA downstream 278078 3503046 ~ 3510980 (-) True AMCG00002102
AMCG00002104 mRNA downstream 290252 3496159 ~ 3498806 (-) True AMCG00002104
AMCG00002118 mRNA upstream 23276 3817822 ~ 3824170 (-) True AMCG00002118
AMCG00002117 mRNA upstream 31630 3826176 ~ 3834827 (-) True AMCG00002117
AMCG00002121 mRNA upstream 116652 3911198 ~ 3918187 (-) True AMCG00002121
AMCG00002122 mRNA upstream 124687 3919233 ~ 3920341 (-) True AMCG00002122
AMCG00002120 mRNA upstream 150591 3945137 ~ 3946555 (-) True AMCG00002120
TU151529 other downstream 2514 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 72806 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 661114 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 784141 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 865837 2921252 ~ 2923221 (-) False AMCG00002085
TU151612 other upstream 420169 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4041949 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 6037365 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 6047549 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 7730347 11524893 ~ 11527355 (-) False AMCG00002317

Expression Profile