RNA id: AMCG00002117


Basic Information

Item Value
RNA id AMCG00002117
length 2364
RNA type mRNA
GC content 0.60
exon number 8
gene id AMCG00002117
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3826176 ~ 3834827 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGTCAGTGAGAATGCAGTGGGTGTTGAGGATGCTGCTGTTGAGCAGCGTTCTCAGTCCCGGCCACGCTGAGGACGGCTTCCCAGCGTGGTTTAAAAACATCTCCACCGACCTGTTCTGGTCCAAAGGGGACATCATGCTGGGGGGGATCTTTCCCATCAATGAACTCGGCAACTCCAGCTCGAGCCAGCGGGAGCAGCCCGACGACGTACACTGCGACAGGGTCCTGTCCTACGGCGTGAGCCAGGTGCTGGTGATGAAGTTTGCAGTGGACGAGATCAACTCCTCTCCCCTCGTGCTCCCTGATACCAGTCTGGGCTTCGAAATCTATGACTCGTGCCGACAGCCCTCGGTCATCATGCAGCCGGCCATGCTGTTCCTGAGCGAGGGGAAGTCCCAAAGCATTCGTGTGCTGTGCAATTACACGGGCTACAGCACACGCGTGGCGGCTGTCATCGGGCCCTCCACCTCCGAGATGGTCTCCATCACGGGCAAACTCTTCAGCTTCTTCCTCATGCCACAGGCCACCATCAAGGACATCCTGCAACGCATCAACCAGACCGACGTGGGCGTGGTGGTGCTGTTTGCCCTGCCCAGTGCGGCCATGGACTTCTTCTCTATGGTGATCAGCAGTAAGATGCAGAAGGTGTGGGTGGGCAGCACCGCCTGGGCCCTGGACAAGAATTTAGTCTCCATGGAGGGCATCCGAACGGTGGGCACAGTGCTGGCCTTCGCCGATAGGAACCAGAAGCTGGAGCTCTTCGAGAACTACACCTACGCCTTCTTATCCCGGCTGGAGCGCGAGCAGCTCAACGGCACCTCCAATGCCAACAGCACCAAAACTGTGGACTTCCCCTTGGCTGATCCTTGTCCCTCCTGCCGGGGCCTGACTCTGCAGAACATATCCATGGCCACGGATGCCCGGCTGCAGCGCACAGCCTTCAGCGTGTACACGGCGGTCTACAGCGTGGCCCACGCCCTGCACAAGCTGCTCAAGTGCAACCAAACACGTTGCCTGAAGAAGGGCTCGGTGCTCTATTCCTGGCAGCTGCTGGAAGTGCTGAAGACCATTTCTTTTGACATCAATGGCACTCAGTTCAAGTTCAACGAAGAGGGGAACCCCAGCATCGGGTACACGGTGCTCACATGGATATGGGGCAAAGACCAGGTCGAATTCCAGGACATCGGCAGCTATGTGGAAAAGTTGGAACTGAAGAAGGAGCTCATCAAGTGGCATCAGAGCACGTCTAATGAGGTCCCAAAGTCCACCTGCTCTGCCAACTGTCAAACTGGCCAGGTGCGCCGAGTGAAAGGATTCCACTcctgctgctttgactgcattGACTGCAATGAGGGGACTTTCCAGAACCGCACAGAGGACTTCCAGTGCACAGACTGTCCGGTCGGCCAGTGGTCGACCCCGCGGAGCAACCAGTGCATAGATCCCACCTTCCACTACCTGGAGTGGAATCAGAACGAGTCCCTGGGGCTGGTGCTGGGCGCGGTGGTGGTGCTGGCCTGCCATGCGGCCGTGGGGTGGCTGTTCCTACGGCACTGGGGGTCCCCGCTGGTGTGCGCCTCGGGGGGGAGTCTCAGCGCCCTGGCCCTGCTCAGCCTGTCGGGGGGGTGTGCCAGCCTCTCCCTCTTTCTGGGCCAGCCGGGGGACGTGGTGTGCCGTCTGCAGCAGCCCCTCAATGCCATCTTCCCCACCTTCGCCCTCGCCACTGTCCTGGCCATCTCACTGCAGGTGATCTACGTGACGGAGTTCCCCGGGGCCACCCCCTCGAGGCTGGAGTCCCTGCGTGGGTTGGGCAGCTGGCTGGTGGTGCTGGCAGTGTGCAGCGTGCAGGCCGGGCTGTGCGGCTGGTTCGTGGAAGAGGGGCAACCCCACTCCCAGTACGTGGCCAGAATGAAGGTCAACTTTGTGGAGAGCTTCCTGCGATGCGAGGTGGAGCCCATGGTCGGCTTCGGTCTGATGTACGGCTTCAACGGGCTGCTGGCTCTCGTCTCCTTCATGTGCACTTTCATGGCGCAAAAGCCAGCCAAGCAGTACAACCTGGCACGGGACATCACTTTCTCCACCCTGGCCTACTGCGTGGTGTGGGTGGTCTTCATCCCCATCTACACCGGCCTGCAGGAGAAGACCAAGTCCCTGGCCCAGATGGCAGCCATCTTGCTCAGCAATCTAGGGCTGCTGGCCGCCTACTTCTTCCCCAAGTGCCACCTGCTGCTGACCACCCCCGACCTCAACACACTAGACTACTTCCGCACATACCTAGAGGGCGCCCCCCTAAAACAGGAGGACAGTCAGGAGAACCAGGGTGACCAGGGGGGAGCAAATGGGCAGGGGGCCCAAGAGAAGTag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151516 lncRNA downstream 121812 3700492 ~ 3704364 (-) True G120914
TU151434 lncRNA downstream 285350 3538762 ~ 3540826 (-) True G120853
TU151429 lncRNA downstream 289651 3535822 ~ 3536525 (-) True G120849
TU151419 lncRNA downstream 323248 3500281 ~ 3502928 (-) True G120842
TU151590 lncRNA upstream 252281 4087108 ~ 4087418 (-) True G120975
TU151682 lncRNA upstream 732612 4567439 ~ 4569294 (-) True G121039
TU151778 lncRNA upstream 881765 4716592 ~ 4722181 (-) True G121111
TU151835 lncRNA upstream 1275775 5110602 ~ 5116017 (-) True G121151
TU151836 lncRNA upstream 1293211 5128038 ~ 5137006 (-) True G121152
AMCG00002118 mRNA downstream 2006 3817822 ~ 3824170 (-) True AMCG00002118
AMCG00002116 mRNA downstream 31630 3789058 ~ 3794546 (-) True AMCG00002116
AMCG00002113 mRNA downstream 48963 3768155 ~ 3777213 (-) True AMCG00002113
AMCG00002108 mRNA downstream 164406 3641182 ~ 3661770 (-) True AMCG00002108
AMCG00002103 mRNA downstream 292357 3527352 ~ 3533819 (-) True AMCG00002103
AMCG00002121 mRNA upstream 76371 3911198 ~ 3918187 (-) True AMCG00002121
AMCG00002122 mRNA upstream 84406 3919233 ~ 3920341 (-) True AMCG00002122
AMCG00002120 mRNA upstream 110310 3945137 ~ 3946555 (-) True AMCG00002120
AMCG00002131 mRNA upstream 385175 4220002 ~ 4253397 (-) True AMCG00002131
AMCG00002132 mRNA upstream 579455 4414282 ~ 4423276 (-) True AMCG00002132
TU151529 other downstream 39632 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 109924 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 698232 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 821259 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 902955 2921252 ~ 2923221 (-) False AMCG00002085
TU151612 other upstream 379888 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4001668 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 5997084 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 6007268 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 7690066 11524893 ~ 11527355 (-) False AMCG00002317

Expression Profile