RNA id: AMCG00002118


Basic Information

Item Value
RNA id AMCG00002118
length 1638
RNA type mRNA
GC content 0.62
exon number 14
gene id AMCG00002118
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3817822 ~ 3824170 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCCGGGGACGATCAGCCACTAGTGTCCACTCAGACAGCAGTGAGATGGACATTGACGGAATCGCAGAGTCAGAGCTGGCGAAGCTACAGAGACAGTTTCGCATCATGGAGGGGGATCGGCAGGCCTATGGGGTCGAGTCCCAGGACTTAATTAACCGGCAGCTcgctgtgcagcagcagcacctcCAGTGCAGCTTCAAGCAGTTCACAGCATCCTCGCGGGACCAGGGGGTCACCCAGAGCCTGCAGGCGGCGCTGGAGCACAAACAGCAGGTGGAGGAGCAGCTGAGGGCCGAGAAACTCTGCGTGGTCCAGCTGGAACAGGAGATCGCCGACCTGGAGCGGAAGCTGTCCAATCAGAGGCGGGGGGGTGGCAGTGCCACACGGAGCCAGAAACCCCCGGCCCGGAAGACCCAGAAAGCCTGCCGCACCCTGGAGAACAAACTGGAGCGGGCCCTGACGCGGTTCAACGAGCAGCTGACCAAGAACGGCAACTTGCGGGAGGAGCTGGACACGCTGTGGGGGGAGCAGGCCAGGTTCCAGCAGCTGTTCCGCAGACTGGACAAGGAGCTGCAGGAGATCCGCAAGGAGATCGGCGCCATGATTGACACCTCCACGGCCGCCTACGATGCCAGGGTGGAGTCGCAGTCCAAGATCGTGCTGCTGAAGGAGAAGGCGGTGAAGGACCTGGCCCAGTACAGCGCCGAGAtgaaggagctggagagggTCATTGCACACGATCGGCTGCTCAAGGAGTTCATGACCACCAAGAGCCACGAGAGGACGGACCAGGACGAGGGCCGGGACACGCAGCGCAGGCCGGCGTCGGAGGAGAAGGAGCGCCGGAAGGCCGATCCCCGGGAGGACACGCCCGAGACCATGGAGGCGGCCTACCAGCACATCCAAAGCATAACCAGAGAGAAGGACCTGGATATCCTAGTCAAGGGGTTCATAGAGGTCGAGGACCGGAACTTCGCGCTCTTCAACTACGTGAACGAGCAGAACAACGAGGCCGAGACCCTGCAGGACTCGATTGGCCAGATCCAGCAGGAGATGGAGCACTTCCGGTCCCAAGGGCAGCGGCAGCAGGAGGAACACAGGGCCCTAATGAGGGACATCGAGCAGCGGCAGAGAGACACGCAGGTGCAGATGCAGGACTTCGAGCACCGGGCCACAGCGGCCAGCAAGGCCCTGGACCAGCTCAAGACAGGAGTGGACGGCATGTTCCAGAAGATGGAGTGCGACCGCTCGGTCATCGAGGACATGCTGGGCTCGTCGGCTGGGATCAGGGACACCAACGTCATGACCTTCCTGGGGCTCGTGGAGCAGAAGACCAGCGAGCTGCTCACGGTGCAGTCTTACCTCAACTCCAAGGACTACGACAAGGAGTACGACCCGAAGGAAGTGGCCCGGGTCCTGCTGGGTCAGAGCCAAGAACTCCCCATCCAGTACCTGTCCATCCAGCCCCCATCCACTGGGTATGTCCCCACCACTGGGAGCGTTTCTCCGGGGACAGTGTCTGAGAACAGTGTGTTGCGCAAGGAGAAGGCCGTTCATCCCGACGGAGGGAAGGAGGTCAAAGCCTCCAAGACCAGCGTGGCATCCAACAGCAAGAGGCGCTCCCAGGAGGCCTGA

Function

GO: NA

KEGG:

id description
K23732 CCDC63_114; coiled-coil domain-containing protein 63/114

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151516 lncRNA downstream 113458 3700492 ~ 3704364 (-) True G120914
TU151434 lncRNA downstream 276996 3538762 ~ 3540826 (-) True G120853
TU151429 lncRNA downstream 281297 3535822 ~ 3536525 (-) True G120849
TU151419 lncRNA downstream 314894 3500281 ~ 3502928 (-) True G120842
TU151590 lncRNA upstream 262938 4087108 ~ 4087418 (-) True G120975
TU151682 lncRNA upstream 743269 4567439 ~ 4569294 (-) True G121039
TU151778 lncRNA upstream 892422 4716592 ~ 4722181 (-) True G121111
TU151835 lncRNA upstream 1286432 5110602 ~ 5116017 (-) True G121151
TU151836 lncRNA upstream 1303868 5128038 ~ 5137006 (-) True G121152
AMCG00002116 mRNA downstream 23276 3789058 ~ 3794546 (-) True AMCG00002116
AMCG00002113 mRNA downstream 40609 3768155 ~ 3777213 (-) True AMCG00002113
AMCG00002108 mRNA downstream 156052 3641182 ~ 3661770 (-) True AMCG00002108
AMCG00002103 mRNA downstream 284003 3527352 ~ 3533819 (-) True AMCG00002103
AMCG00002102 mRNA downstream 306842 3503046 ~ 3510980 (-) True AMCG00002102
AMCG00002117 mRNA upstream 2006 3826176 ~ 3834827 (-) True AMCG00002117
AMCG00002121 mRNA upstream 87028 3911198 ~ 3918187 (-) True AMCG00002121
AMCG00002122 mRNA upstream 95063 3919233 ~ 3920341 (-) True AMCG00002122
AMCG00002120 mRNA upstream 120967 3945137 ~ 3946555 (-) True AMCG00002120
AMCG00002131 mRNA upstream 395832 4220002 ~ 4253397 (-) True AMCG00002131
TU151529 other downstream 31278 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 101570 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 689878 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 812905 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 894601 2921252 ~ 2923221 (-) False AMCG00002085
TU151612 other upstream 390545 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4012325 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 6007741 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 6017925 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 7700723 11524893 ~ 11527355 (-) False AMCG00002317

Expression Profile