RNA id: AMCG00002121


Basic Information

Item Value
RNA id AMCG00002121
length 2196
RNA type mRNA
GC content 0.43
exon number 10
gene id AMCG00002121
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3911198 ~ 3918187 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCCTCATTCTTCTACGGAAACTACTGAACAACACACAACGTCACCTCATACAACAGAAGAACCATCTTCCacagaaaaacattcaacacacttcacaacagaagagaaaaataaatcAAACTAGTCTAAAGCATACAAGTACAAAGTCACCTCACACTACAGAAGAACCATCCTCCACTGGAAAACACTCAACACATTTCACaccagaagagaaaaataaatcgtCAACCTCTACTGTCTCCACTGAATCACACACTTCAGTCACATCAAATGTTCCTCATTCTTCTAAAGAAACTACTGAACAACACACAACGTCACCTCACACAACAGAAGAACCATCTTCCACAGAAAAATATTCAACACATATCACACCAGAAGAGAAAAATACTTCATCAACCTCTAATCTCTCCACAGAATCACACACTTCTGTGACATCAAATGTTACTCATTCCTCCATAGAAACTACTGATCAACATACGACGTCACCTCAAACTACACAAGAACCCTCGTCATCTGGAACACATTCAACACACTTCACACCAGAAGAGAAAAATACTTCATCAACCTCTACTGTTTCCACTGAACCACACACTTCTGTGACATCAAATGTTGCGAATTCTCCTACAAAAACTACTGAACAACACACAACGTCACCTCACACAACAGAAGAACCATCTTCATCTGGAAAACATTCAACACACTTCACACCAGAAGAGAAATATACTTCATCAACCTCTACTGTCTCCACTGAACCACATACATCTGTAACATCAAATAATCCTCATACTTATACAGAAACTAGTCTAAATGATACAAGCACAAGGTCACCTTACACTACAGAAGAACCCTCTTCATCTGAACCACATTCAACACATCTCACaccagaagagaaaaataaatcatctaCCTCTAATATTTCCACTGAACCACACATTTCAGTCACATCAAATGTTCCTCATTCTTCTACAGAAActacacaacagcacacaaagTCACCTCACACTACAAAAGAAAATCATTCATCAACTACAAGAACCCACAGTACATCAATCCACACTACAGAAGAAGCTTCCTCATCCAGtggaaaacaatgcaatgaTGCTGAATGTGACTGCAACGGGTATCCCTGTGTCTTCAGTAGTATTACTGGGACATGTCAATGTCAATGCCCGAATTTCACATTGAGCAATTCACACTGCCTTGCTGGGGAGAACTACACCACAGTGCACATCAATTCCAGCGCAATACCAACCAGGAACTTCACTATCTCCTTGAGAATACATAAGGAATTTAACCCTGACCTGGAAAATACAAGCTCTCCgttatacattaaatacacagacaTCATACAACCTGAGCTGGAGAAATTGTGCAAACAGGCTGATCCAGACAATTTCAGAAATGTGACGATCACTGGTTTTAGGAGTGGGAGCATCATCGCAGAAAGTGTTGCTCAGTATAACTATCCCAACAATCAGACACAAATTGAGTTCCTGAACACAGGACTGAACTCCACATTACATACTATGTTTAACCCTCACAATTTGACAAACATAACTGAGAGATTAAATGCAACAGTAGAGCCTACAATCGTTGTGCAAAATACCACTGTACAAAaTGTCTTAGACCTAAGACCATACGTCAACTGTAGCTTGAGTTACTCGAACTACACAATGAAAGTTGTGAATGGGGTTTTGGAGTGTGAAGGACCCTGCGCCACTCATCGAAACTACTGTAGCGGACATGGAGCCTGCTCTAACTTAAAAGATGGACCAAGTTgcaaGTGCTACGCGTCGGACTTCCACCAGTACTCCGGGGAACACTGCCAGCTGTACGGGATCAGCGCCGGTTTCTACGCTGTCCTGTTCGGCGTGCTGGGAGCCGCCCTGCTGCTCATCATCATTGTGATCGTGGCCGTCCTGGTGCTGAAGAAGAAGACAAGAACGCACTCATGGTGGGTCGGTGTGGGGAAAGCCTCTGCTCTTATCCGCTGGGAGGCAGACCTGGGCAATATGGGCTCAAGCACTGAAGGTTTATCAGGGAGGACCGCAAAATACAACCTCAATGAAAACATGACTTACGCCAACGAAATTGATCAAGGAGTTTTCAGGCCTAAGCTGGAAAATGTTGACGTCTCGCAAAACGTCAAGACCAAGCGACCAGAGCTGCGCAGCCCGTCCAGCGATCAATAG

Function

GO: NA

KEGG:

id description
K22016 MUC3_17; mucin-3/17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151516 lncRNA downstream 206834 3700492 ~ 3704364 (-) True G120914
TU151434 lncRNA downstream 370372 3538762 ~ 3540826 (-) True G120853
TU151429 lncRNA downstream 374673 3535822 ~ 3536525 (-) True G120849
TU151419 lncRNA downstream 408270 3500281 ~ 3502928 (-) True G120842
TU151590 lncRNA upstream 168921 4087108 ~ 4087418 (-) True G120975
TU151682 lncRNA upstream 649252 4567439 ~ 4569294 (-) True G121039
TU151778 lncRNA upstream 798405 4716592 ~ 4722181 (-) True G121111
TU151835 lncRNA upstream 1192415 5110602 ~ 5116017 (-) True G121151
TU151836 lncRNA upstream 1209851 5128038 ~ 5137006 (-) True G121152
AMCG00002117 mRNA downstream 76371 3826176 ~ 3834827 (-) True AMCG00002117
AMCG00002118 mRNA downstream 87028 3817822 ~ 3824170 (-) True AMCG00002118
AMCG00002116 mRNA downstream 116652 3789058 ~ 3794546 (-) True AMCG00002116
AMCG00002113 mRNA downstream 133985 3768155 ~ 3777213 (-) True AMCG00002113
AMCG00002108 mRNA downstream 249428 3641182 ~ 3661770 (-) True AMCG00002108
AMCG00002122 mRNA upstream 1046 3919233 ~ 3920341 (-) True AMCG00002122
AMCG00002120 mRNA upstream 26950 3945137 ~ 3946555 (-) True AMCG00002120
AMCG00002131 mRNA upstream 301815 4220002 ~ 4253397 (-) True AMCG00002131
AMCG00002132 mRNA upstream 496095 4414282 ~ 4423276 (-) True AMCG00002132
AMCG00002136 mRNA upstream 652789 4570976 ~ 4579172 (-) True AMCG00002136
TU151529 other downstream 124654 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 194946 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 783254 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 906281 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 987977 2921252 ~ 2923221 (-) False AMCG00002085
TU151612 other upstream 296528 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 3918308 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 5913724 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 5923908 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 7606706 11524893 ~ 11527355 (-) False AMCG00002317

Expression Profile