RNA id: AMCG00002124


Basic Information

Item Value
RNA id AMCG00002124
length 657
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00002124
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3983670 ~ 3987843 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTACTTTACCAGGAACAGTGCCTCGCATGATGAGACCCGCACCAGGCCAGAACTACCCCCGCACCGGATTCCCCCTGGAAGTGTCCACTCCTCTGGGTCAAGGCCGGGTGAACCAGCTGGGCGGCGTGTTCATCAATGGCCGGCCGCTGCCGAACCACATCCGGCACAAAATCGTGGAGATGGCCCACCACGGGATCCGGCCCTGCGTGATCTCCCGGCAGCTGCGCGTCTCCCACGGCTGCGTGTCCAAGATCCTGTGCCGGTACCAGGAGACCGGCTCCATCCGCCCCGGTGCCATCGGGGGCAGCAAGCCCAGGGTAGCCACGCCGGACGTGGAGAAGAGGATCGAGGAGTACAAGCGCGACAACCCCGGCATGTTCAGCTGGGAGATCCGGGACAAGCTGCTGAAGGACGGGGTGTGTGACAGAGGCACGGTTCCTTCAGGTGAGGCCCCCTCTGTGAGCTCCATTAGTCGGGTCCTCAGAGCTCGTTTTGGGAAGAAAGACGACGAAGACGATTGTGATAAAAAGGATGAAGAAGGCGagaagaaaaccaaacacaGCATTGACGGCATACTAGGCGACAAAGGTAATGACGCTGGCACTTTGTTTCTGCACACATCTGGGCAAGGATTGTTTAGGATTAAGTGTTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0048066 developmental pigmentation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09381 PAX3_7; paired box protein 3/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151573 lncRNA upstream 42954 3940456 ~ 3940716 (+) True G120961
TU151531 lncRNA upstream 191729 3788716 ~ 3791941 (+) True G120928
TU151401 lncRNA upstream 480743 3500337 ~ 3502927 (+) True G120827
TU151397 lncRNA upstream 489603 3491280 ~ 3494067 (+) True G120823
TU151360 lncRNA upstream 867246 3113450 ~ 3116424 (+) True G120794
TU151589 lncRNA downstream 99316 4087159 ~ 4087472 (+) True G120974
TU151687 lncRNA downstream 593011 4580854 ~ 4581879 (+) True G121044
TU151688 lncRNA downstream 594130 4581973 ~ 4582280 (+) True G121045
TU151783 lncRNA downstream 761285 4749128 ~ 4752334 (+) True G121114
TU151862 lncRNA downstream 1213559 5201402 ~ 5202462 (+) True G121176
AMCG00002119 mRNA upstream 85746 3886487 ~ 3897924 (+) True AMCG00002119
AMCG00002114 mRNA upstream 141259 3838363 ~ 3842411 (+) True AMCG00002114
AMCG00002115 mRNA upstream 167956 3797255 ~ 3815714 (+) True AMCG00002115
AMCG00002109 mRNA upstream 197126 3779297 ~ 3786544 (+) True AMCG00002109
AMCG00002111 mRNA upstream 222342 3744848 ~ 3761328 (+) True AMCG00002111
AMCG00002125 mRNA downstream 32385 4020228 ~ 4021143 (+) True AMCG00002125
AMCG00002126 mRNA downstream 44291 4032134 ~ 4033552 (+) True AMCG00002126
AMCG00002123 mRNA downstream 65951 4053794 ~ 4057620 (+) True AMCG00002123
AMCG00002127 mRNA downstream 107507 4095350 ~ 4101806 (+) True AMCG00002127
AMCG00002128 mRNA downstream 166703 4154546 ~ 4154923 (+) True AMCG00002128
TU151430 other upstream 444116 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 447242 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 1024195 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 2042854 1924022 ~ 1940816 (+) True G120518
TU150681 other upstream 2990906 693622 ~ 992764 (+) True AMCG00002019
TU151873 other downstream 1230987 5218830 ~ 5223498 (+) True AMCG00002152
TU152254 other downstream 2598811 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 2598811 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 3405957 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 4765883 8753726 ~ 8762079 (+) False AMCG00002245

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007146 False 2288 mRNA 0.51 8 NC_007122.7 41243094 ~ 41364446 (+)
grasscarp (Ctenopharyngodon idella) CI01000057_00020196_00026430.mRNA True 937 mRNA 0.48 5 CI01000057 20196 ~ 26699 (+)