RNA id: AMCG00002125


Basic Information

Item Value
RNA id AMCG00002125
length 411
RNA type mRNA
GC content 0.64
exon number 2
gene id AMCG00002125
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4020228 ~ 4021143 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGACTGTTCGCGGCCCACAGACGTCAGGAACGGTTCTGGCGGCCTGGCGTGGAAACCGCATGGACGAGAGCTCGGACGTGGAGTCGGAGCCAGACCTGCCGCTGAAGAGGAAGCAGCGGCGCAGTCGGACCACGTTCACGGCGgagcagctggaggagctggagaaggcCTTCGAGAGGACGCACTACCCGGACATCTACACCCGCGAGGAGCTGGCGCAGAGGACCAAGCTCACCGAGGCGCGCGtgcaggtcagaggtcacccCGGGGGGCTGGGGCGGAGTGCCCGGGCGCTTCTGGGTTTCGTTTTGCATAAAACCGTGCTCCTCCCTGAGCGGGAGCAGAGAGGCAGGCCCGCTCGCACGCACGCACAGCAGAAAGACGGAGAGATATGTAGATTTGTGTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0048066 developmental pigmentation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151573 lncRNA upstream 79512 3940456 ~ 3940716 (+) True G120961
TU151531 lncRNA upstream 228287 3788716 ~ 3791941 (+) True G120928
TU151401 lncRNA upstream 517301 3500337 ~ 3502927 (+) True G120827
TU151397 lncRNA upstream 526161 3491280 ~ 3494067 (+) True G120823
TU151360 lncRNA upstream 903804 3113450 ~ 3116424 (+) True G120794
TU151589 lncRNA downstream 66016 4087159 ~ 4087472 (+) True G120974
TU151687 lncRNA downstream 559711 4580854 ~ 4581879 (+) True G121044
TU151688 lncRNA downstream 560830 4581973 ~ 4582280 (+) True G121045
TU151783 lncRNA downstream 727985 4749128 ~ 4752334 (+) True G121114
TU151862 lncRNA downstream 1180259 5201402 ~ 5202462 (+) True G121176
AMCG00002124 mRNA upstream 32385 3983670 ~ 3987843 (+) True AMCG00002124
AMCG00002119 mRNA upstream 122304 3886487 ~ 3897924 (+) True AMCG00002119
AMCG00002114 mRNA upstream 177817 3838363 ~ 3842411 (+) True AMCG00002114
AMCG00002115 mRNA upstream 204514 3797255 ~ 3815714 (+) True AMCG00002115
AMCG00002109 mRNA upstream 233684 3779297 ~ 3786544 (+) True AMCG00002109
AMCG00002126 mRNA downstream 10991 4032134 ~ 4033552 (+) True AMCG00002126
AMCG00002123 mRNA downstream 32651 4053794 ~ 4057620 (+) True AMCG00002123
AMCG00002127 mRNA downstream 74207 4095350 ~ 4101806 (+) True AMCG00002127
AMCG00002128 mRNA downstream 133403 4154546 ~ 4154923 (+) True AMCG00002128
AMCG00002129 mRNA downstream 154489 4175632 ~ 4175847 (+) True AMCG00002129
TU151430 other upstream 480674 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 483800 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 1060753 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 2079412 1924022 ~ 1940816 (+) True G120518
TU150681 other upstream 3027464 693622 ~ 992764 (+) True AMCG00002019
TU151873 other downstream 1197687 5218830 ~ 5223498 (+) True AMCG00002152
TU152254 other downstream 2565511 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 2565511 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 3372657 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 4732583 8753726 ~ 8762079 (+) False AMCG00002245

Expression Profile