RNA id: AMCG00002128


Basic Information

Item Value
RNA id AMCG00002128
length 378
RNA type mRNA
GC content 0.67
exon number 1
gene id AMCG00002128
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4154546 ~ 4154923 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTGCCACACACAGGAACAGCCTGTGCGAGGTGCGGGGCGGGCACGCGGGGGGCCGGCCGGGCCGTCATCCCAGTCTCCCTCACGAAAACCTGCAGATCCCCAGACCGGCCGGCAGCGGTGTGCGCAGGAGCAGCAGCACCGGCAGCGGCAAGATGCTGTCCATGTCGTACAGCGAGAGCGTGCGCAGCGGCATCAACCGCTACCACTCGGACCAGGGCCTCAACCAGCCGCGGCACACTGACCAGGCGGAGCTGCAGCGGCTCCGGGAGGTACGGGCCGCCGCGCAGGTCAAGAACATGGAGGACTTCCTGAAGGTGAACGGCCTGTCGCTGGAGGACTGTGTCGCCTACCAGACGGGCATGAAGTACAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151589 lncRNA upstream 67074 4087159 ~ 4087472 (+) True G120974
TU151573 lncRNA upstream 213830 3940456 ~ 3940716 (+) True G120961
TU151531 lncRNA upstream 362605 3788716 ~ 3791941 (+) True G120928
TU151401 lncRNA upstream 651619 3500337 ~ 3502927 (+) True G120827
TU151397 lncRNA upstream 660479 3491280 ~ 3494067 (+) True G120823
TU151687 lncRNA downstream 425931 4580854 ~ 4581879 (+) True G121044
TU151688 lncRNA downstream 427050 4581973 ~ 4582280 (+) True G121045
TU151783 lncRNA downstream 594205 4749128 ~ 4752334 (+) True G121114
TU151862 lncRNA downstream 1046479 5201402 ~ 5202462 (+) True G121176
TU151864 lncRNA downstream 1047926 5202849 ~ 5204614 (+) True G121178
AMCG00002127 mRNA upstream 52740 4095350 ~ 4101806 (+) True AMCG00002127
AMCG00002123 mRNA upstream 96926 4053794 ~ 4057620 (+) True AMCG00002123
AMCG00002126 mRNA upstream 120994 4032134 ~ 4033552 (+) True AMCG00002126
AMCG00002125 mRNA upstream 133403 4020228 ~ 4021143 (+) True AMCG00002125
AMCG00002124 mRNA upstream 166703 3983670 ~ 3987843 (+) True AMCG00002124
AMCG00002129 mRNA downstream 20709 4175632 ~ 4175847 (+) True AMCG00002129
AMCG00002130 mRNA downstream 37737 4192660 ~ 4219877 (+) True AMCG00002130
AMCG00002135 mRNA downstream 399755 4554678 ~ 4557375 (+) True AMCG00002135
AMCG00002134 mRNA downstream 407989 4562912 ~ 4569268 (+) True AMCG00002134
AMCG00002133 mRNA downstream 429512 4584435 ~ 4586858 (+) True AMCG00002133
TU151430 other upstream 614992 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 618118 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 1195071 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 2213730 1924022 ~ 1940816 (+) True G120518
TU150681 other upstream 3161782 693622 ~ 992764 (+) True AMCG00002019
TU151873 other downstream 1063907 5218830 ~ 5223498 (+) True AMCG00002152
TU152254 other downstream 2431731 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 2431731 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 3238877 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 4598803 8753726 ~ 8762079 (+) False AMCG00002245

Expression Profile