RNA id: AMCG00002135



Basic Information


Item Value
RNA id AMCG00002135
length 801
RNA type mRNA
GC content 0.63
exon number 4
gene id AMCG00002135
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4554678 ~ 4557375 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCCCCGGGGCAGCTGATAACGTACACGCAGATCCAGCCCCACCAGCTGATCCAGCACCAGCAGCACAAGCAGCACCAGTTTGTGATCCAGCAGCAGACCCAGCTCCCGCAGAGGAGCCAAGCCCAGCTCCTCCACACGGCCTCCATCCAGCCCCAGCTGCAGACACAGGCCCAGACCGTGCAGGCCCTCACCATCCAGCCCGCGGTGGCTGCCCAGCCCCAGAGCCAACAGTGTACCATCCCGGTCTTGCCCAAACCTCCCAGCCACCAGCCCCCAGGACCGAGCCCTCAGGCCACCATCTTCCACTCCACAGTGAGTCCCCAGACGCTGCAACACAACGGGCAACCCACCCCGATGCACCAGGCCCCACAGCCCAAACCTCAGCCCGTTCAACTGGCAGCCGTCAACCTTCAGATCCAGCCCACGCCTAATTCGACCCCTCGGCTGATCCAGGACAGCGTGAGTAAAGACAAGGGTGCTGCCGCGTTGCCCCGGGAGGCCTGTCCGAACCCCAGTGTCCTGCAAGTCGCTTCTGCTGCCCCTCCGACCACAACCACCACGGAGCAACGCAAGCCAGACGCCAGCAAGCCCACTGTGCCAGGTACTGCCAACACCATCAATTTACACTATTCTAGATTGCTGAAGAGTGAGCGTTCAACTCTGAGAAAGGCCGCCTGTGCCAAGAGTGGCCTGATCGGCTCGGAGCGCGGAGGCCGTTACGTCAGTGCCATCTGTATGTCCGCTAGCCGCCCACAAAGGCCTTGCCTGCTCGCTCTCTCCCCTCAAGCGGAAGAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151589 lncRNA upstream 467206 4087159 ~ 4087472 (+) True G120974
TU151573 lncRNA upstream 613962 3940456 ~ 3940716 (+) True G120961
TU151531 lncRNA upstream 762737 3788716 ~ 3791941 (+) True G120928
TU151401 lncRNA upstream 1051751 3500337 ~ 3502927 (+) True G120827
TU151397 lncRNA upstream 1060611 3491280 ~ 3494067 (+) True G120823
TU151687 lncRNA downstream 23479 4580854 ~ 4581879 (+) True G121044
TU151688 lncRNA downstream 24598 4581973 ~ 4582280 (+) True G121045
TU151783 lncRNA downstream 191753 4749128 ~ 4752334 (+) True G121114
TU151862 lncRNA downstream 644027 5201402 ~ 5202462 (+) True G121176
TU151864 lncRNA downstream 645474 5202849 ~ 5204614 (+) True G121178
AMCG00002130 mRNA upstream 334801 4192660 ~ 4219877 (+) True AMCG00002130
AMCG00002129 mRNA upstream 378831 4175632 ~ 4175847 (+) True AMCG00002129
AMCG00002128 mRNA upstream 399755 4154546 ~ 4154923 (+) True AMCG00002128
AMCG00002127 mRNA upstream 452872 4095350 ~ 4101806 (+) True AMCG00002127
AMCG00002123 mRNA upstream 497058 4053794 ~ 4057620 (+) True AMCG00002123
AMCG00002134 mRNA downstream 5537 4562912 ~ 4569268 (+) True AMCG00002134
AMCG00002133 mRNA downstream 27060 4584435 ~ 4586858 (+) True AMCG00002133
AMCG00002140 mRNA downstream 133591 4690966 ~ 4721931 (+) True AMCG00002140
AMCG00002143 mRNA downstream 231137 4788512 ~ 4791668 (+) True AMCG00002143
AMCG00002145 mRNA downstream 405679 4963054 ~ 4967720 (+) True AMCG00002145
TU151430 other upstream 1015124 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 1018250 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 1595203 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 2613862 1924022 ~ 1940816 (+) True G120518
TU150681 other upstream 3561914 693622 ~ 992764 (+) True AMCG00002019
TU151873 other downstream 661455 5218830 ~ 5223498 (+) True AMCG00002152
TU152254 other downstream 2029279 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 2029279 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 2836425 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 4196351 8753726 ~ 8762079 (+) False AMCG00002245

Expression Profile