RNA id: AMCG00002136


Basic Information

Item Value
RNA id AMCG00002136
length 2325
RNA type mRNA
GC content 0.64
exon number 13
gene id AMCG00002136
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4570976 ~ 4579172 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCTGCACCGCACACCCGCCCGGCCAGCGGAGGACATGCCCTCGGAGTCCGTCAGGGTGGTGGTCCGCTGCCGGCCCCTGAACGAGCGAGAGAAGGCGCTGAACTGCAGGGTGGTGGTCAGCATGGACCCGGGCCGCTGCCAGTGCTTCATCCAGAGGCCGGGCGCCACCGACGAGCCGCCCAAGCAGTTCACCTTCGACGGCACCTACTTCGTCCACCAGAGCACCGAGCAGATGTACAACGAGATCGCCTACCCGCTGGTGGAGACGGGCAGTGGCAAGTCCTTCACCATGCAGGGGGTCCCCGAGCCGCCCGCCCAGAGAGGGGTCATTCCCAGGGCCTTCGAGCACATCTTCGAGAGCATACAGTGTGCTGAAAATACAAAGTTCCTTGTAAGAGCCTCGTACCTTGAGATCTACAACGAAGAAGTCAGGGACCTGCTGGGCGGCGACACCAAACAGAAATTGGAGGTAGGGGAGCCATCTTGTTGGTCCTCCTGTCTGAATGACGTCCTGCTGAACGTGGCCGGGAAGGACCACCTGCGGGCGGGGAAGCTGAACCTGGTGGACCTGGCGGGCAGCGAGCGGCAGTCTAAGACGGGCGCCACGGGCGAGCGCCTGCGCGAGGCCACCAAGATCAACCTGTCCCTGTCGGCGCTGGGCAACGTCATCTCGGCACTGGTGGACGGCCGCTCCAAGCACGTGCCGTATCGTGACTCCAAGCTCACCCGCCTGCTGCAGGACTCGCTGGGGGGCAACACGCGCACGCTCATGGTGGCCTGCCTCTCGCCCGCTGACAACAACTACGAGGAGAGCCTGAGCACACTGCGTTACGCCAACCGGGCCAAGAGCATTCAGAACCAGCCGCGCATCAACGAGGACCCCAAGGACGCCCTCCTGCGCGAGTACCAGGCCGAGATCCAGCAGCTGCGTACCCTCCTCTCTGGCCAGCTGCGAGACCCCAACCTCTCCACTCTCCTGGCCAGCAAGATCAACGGGTCTGAGGTGCCGTCTCAACCACTACCGGGCACTGCTGTGGACAGTGAGGATGACAAGGAGAAGATAAGACAAgAGTACGAGGAGAAGCTGGCCAGGTTGCAGGCGGAGTACGACGCAGAGCAAGAGTCCAAAAACCGGCTGCAGGAAGACATCGCAGCCCTGCGCAGCTCCTATGAGGCCAAACTGAACAACCTGGGCCAACGGACCCCTGGCAAAGCCCCAGGAGTCCCGGACCGTGTGGAGGAGACCGGAGAGGAGGAGCTGTCTCGGCACGGCACGGCTCCTCCACAGGCGGTCACCGGAGTGGAGCAGGCCTTGGAAAAGGTGGCCCGGCACATAGGCAGCGTGCAGCGGGATGGTGAGGCAGCCGAGGAGCCTGCGGAGCCCCCCAGGGCCACACCGGGACCCCTGGACCAGAAACACGTGCTGGAGAGGCTGCAGCAGCTGGAGCAGGAGTTCATCGGGGGGGAGCAGGCGCGCAATGAGGAGCTGCGGCAGAGACACCGGCAGCGCCAGAGCCTGGCCGACCAGCGCAAGCAGCAGCTGCGGGAGGCGCTGGCCGATGGCGGCGAGGAGAGCGAAAGCGTGCTGCTCGACGTGTACGACTCCATCCAGGAGGAAGTGCGCGCCAAGAGCCGGCTGCTGGAGGTGGCGAACGGGAAGCTGAAGGCGGCAAGCATCGAGATCCGGGACCTGCAGTCCGAGTTTGAGCTGGAGCGCAACGACTACCTGGCCACCATCCGCCGGTTGGAGCGTGAGGGGCAGCTCCTGGGCCACATCCTGGAGCGCCTGCAGCCGCTGGTCCGCCGGGACTGCAACTACAGCAACGTGGACCGGCTGCGCAGGGAGGCGGTGTGGGACGAGGACGGCGCCGCCTGGAGGCTCCCAGAGCTGGTGGTGCACAAAACAGCTCTGCCAGCGGCAGTGCCCCCTCTGACCTCAGCTAATCCGGCCAATCAGGGCAGGCTGTCGGGACGGAGGAACTCCGCGGCGGAGAATGGAGAAGCGTCAATCCTGGAGGAGGACAGGTACAAGGAGATGCTGAACCGCAGTGACAGTGAAAACATCGCTAGCAACTACTTCAGATCCAAGAGAGCCAGCCAGCTGCTCAACTCCGATCCCATGAAGAGCCTGGCTGTCCACACTGTCCCCCTCGGTAATGGGACGTCCCACATGACCTCCAGTGCAGTCAATATCTCCCCCACATCCGGCCTGGATGCCCTCCTGCCCCGGCCTTTTCGCCTGGAGTCCCTGGGGCTGCCCCCTCCGAGTGCCAAGGCCAAGCGCAAGAAGAACAAAACTAACAGCATGTGCGATGGCTACTGA

Function

GO: NA

KEGG:

id description
K20198 KIF17; kinesin family member 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151682 lncRNA downstream 1682 4567439 ~ 4569294 (-) True G121039
TU151590 lncRNA downstream 483558 4087108 ~ 4087418 (-) True G120975
TU151516 lncRNA downstream 866612 3700492 ~ 3704364 (-) True G120914
TU151434 lncRNA downstream 1030150 3538762 ~ 3540826 (-) True G120853
TU151429 lncRNA downstream 1034451 3535822 ~ 3536525 (-) True G120849
TU151778 lncRNA upstream 137420 4716592 ~ 4722181 (-) True G121111
TU151835 lncRNA upstream 531430 5110602 ~ 5116017 (-) True G121151
TU151836 lncRNA upstream 548866 5128038 ~ 5137006 (-) True G121152
TU151881 lncRNA upstream 648502 5227674 ~ 5228131 (-) True G121188
TU151991 lncRNA upstream 1278829 5858001 ~ 5861642 (-) True G121271
AMCG00002132 mRNA downstream 147700 4414282 ~ 4423276 (-) True AMCG00002132
AMCG00002131 mRNA downstream 317579 4220002 ~ 4253397 (-) True AMCG00002131
AMCG00002120 mRNA downstream 624421 3945137 ~ 3946555 (-) True AMCG00002120
AMCG00002122 mRNA downstream 650635 3919233 ~ 3920341 (-) True AMCG00002122
AMCG00002121 mRNA downstream 652789 3911198 ~ 3918187 (-) True AMCG00002121
AMCG00002139 mRNA upstream 14980 4594152 ~ 4600114 (-) True AMCG00002139
AMCG00002138 mRNA upstream 23234 4602406 ~ 4636492 (-) True AMCG00002138
AMCG00002137 mRNA upstream 72123 4651295 ~ 4673352 (-) True AMCG00002137
AMCG00002141 mRNA upstream 162317 4741489 ~ 4747439 (-) True AMCG00002141
AMCG00002142 mRNA upstream 169996 4749168 ~ 4752332 (-) True AMCG00002142
TU151612 other downstream 351099 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 784432 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 854724 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 1443032 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 1566059 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 3257323 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 5252739 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 5262923 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 6945721 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 7088583 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007083 True 3008 mRNA 0.47 14 NC_007122.7 37652870 ~ 37677206 (+)
grasscarp (Ctenopharyngodon idella) CI01000029_05724774_05734931.mRNA True 1461 mRNA 0.55 4 CI01000029 5724774 ~ 5734931 (-)