RNA id: AMCG00002141


Basic Information

Item Value
RNA id AMCG00002141
length 2739
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00002141
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4741489 ~ 4747439 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACTGTCTGATCAACTTATACGGACACTACAGATTAGACCAAACGAGtgaaaaatgaaagcttttCCAGTTTTCCTCCTGTGTTCCTGCTTCGTGTGGAACTCCCAAAGTGTGACGGTCGTGGATGGCAATTTCGCCTTCCCCCTGGACACAGTGATGCAGCTGAAGTGTCTGATGGACGGTGACATTGGGACAAACCCTCGCTTGGCACAAACCAGCGCTGCGGTGATCTGTGCCAACCCCGCTCTGCCCGAGGACTTCCGGCCTGTGTGCCAGAGCCAGGGGGCAGATCTGGTTTTCTCCCGACTGGAGTTGTTGTATTGTTCCTAATGACCTACACTGCGGGCAAACACCCCCACAATGGGCTTAATCATTTCCCAAGCCAGCCAGGTAAAATTATGCTATACACAGGTGTTGCCTCACTGAAAGGTCAGACAGAGAAGTGATAAGAACAAATAAAGAGACTGACGGCGTCCCAGAGTCGTAAACTCACAGCACACAAGTGACAAATTCAAATGATATAGATATAGAGGAGACCATCAGTGTGAGCGCTCTCTCAAAATCAGGTCGCCAGTAAAACATGTGAATGTTTATctgattattgtattgttactgaatgacaaaatggaaatgtgtcaCTGGGTGTAACGAGTCTTAAAGCTCAAGCAGCCTGGCATTGTGCGTCCTCAGCCACAGAGACGACCCCATTCGAAGAAGAAAAGACCGCAAAGCCTGTCACAAGTGTGTCGTGACCCAGAGAACCATTCACTTCAGTGTCCATTCATTTCCACagctattttatatatatttatattctttcaGAGAAGCTATGAACAAGAATCTTCTGAATAGAAAGTCTAGCAAGCAAAAGTCTCCCTGAGTGCCATATAACACTGAACGTTGGTGTAACATTTAGACTgctgatgttttatttctggGAGGATTTAGAGTAGGgcgaatacatttttatgatgatgaCGATGGTGATGCTTATTAAACTGTATGAAACAATTTAATCCCTCATGAATCATCCCTGAATTCAATTCGTTATCCCGGGCTAGCACAGAGCAGAGGTCAAACCCAACCTAAATtatctgattaaattaatatacatagAATGGTACAATGTCATATATATGTGATATTTCCTTCTGTTCCAGCGAAGGTGACGACCCAACCTGACCTCTGTGAAATCTGTGCGAACGCTGCTTGCACTGGATGTCTATAAATGGTTTGTTGCCGTCCTTCCCTTAGGACATCAGCTACACATGTCCTGGGAATCTGCCTGCCCTGCAGACACACCAAACTCAGCGATTCCTCTACAGACAGTTTAACTGAATCATCATGTAATCTCCATTCCCAGTGATCAGCCTGCTTTGCTTAATCCAGACACCAGGGCCAGCTCTGTGTGCGTTCTGGACACATCTGAAATGTGTTCTGTACAGCACAGTGGACACGAACTGGGAAGCAGGATGTAGTGTCCAAGCTGTGTCCAACATATTCTCACTAATGGAGCTCTGTCCAATGGAGCTGGGTATCCCAAACACCACCGGAAATGGCAATGGTTTGAGGATCCCAAGCAGGaaaagctttctttaaaaaaaaaaaaaaagctagatGTTAGCCCGGCTTTCcattactttctttaaaatgctgTGTAGATAACCCTTAGAACTGTGTAAAAGATAGCAACGAATAAGAAAAAGCTGCAGATAACCCTTTGATCCTGAGAAGAGATTGTGCACAGCCTTCTCAGATAGCTCTAAATGAAAATCAGGTGTTACCGAATCAAGATCCTGAGAAACCACAATTAGAAAATTATCTACGAGAAATTCTTAGTTTTTTATCGTTGACTGCCACACTCACTTggggtttgtttttcctgaagATGGAAGCACAGACTGTTGCCAAGTGTTTCACGCGTACTCAAGGAGGATCTGCGCTGGCGATTTAACTGGCGGCTTGTTTTCGCTCCTTACAAGTACATGCTGACAATAGATGTTTTGTATATGAcccttattattttgtgtgaagCTGTAAAGTTATAATGGAGTAATAATTAACTCTAGACAGAGATAAACTTCAATGACTTCAAtgatacagaaaatacacaaaccaATCGCACCCACTGTTGATAAACATTGCAGCACGTTGTTCCAGAGAAGGGTCACGCGGTGCGGTGTGTGCTCTTGTTgtgtgtggtgttgttttttctggtaGAAGTAACAGTGGAAGCAAACATATCAAAGCAATCAAAATAAGAGTTGTCTGTCTCTAATAAAACCATTTTATCAtgcaataacaatataaatgtttttaatacaatataaagcaTGAATTCTCCACATACATGTGAAGAATGTGAGTCTATGAATATAGTTCTGTGAACGGTGAGtgtatgtacgtgtgtgtgtttgtgtgcttgtgcgTGTGCAGGTATActcaacacaaatataaacacaacatgtaaagtgttggtcccatgttccACGAGGTGAAATTAAAGATCCCAGTCATTTTCTtacacacaaaaagcttatttctctcaaattgggtgcacagttttgtttacatctctgttagtgagcatttgtCCTTTGTCCATATAACCCATCCACCTGACAGACAGGTGTGGcagatcaagaagctgattaaagtCTGATCATTGTCCCTTTATTTATGAttgtatttcaattgactgacatgcttatatgaactgtaactcagtacaatattttaa

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151778 lncRNA downstream 19308 4716592 ~ 4722181 (-) True G121111
TU151682 lncRNA downstream 172195 4567439 ~ 4569294 (-) True G121039
TU151590 lncRNA downstream 654071 4087108 ~ 4087418 (-) True G120975
TU151516 lncRNA downstream 1037125 3700492 ~ 3704364 (-) True G120914
TU151434 lncRNA downstream 1200663 3538762 ~ 3540826 (-) True G120853
TU151835 lncRNA upstream 363163 5110602 ~ 5116017 (-) True G121151
TU151836 lncRNA upstream 380599 5128038 ~ 5137006 (-) True G121152
TU151881 lncRNA upstream 480235 5227674 ~ 5228131 (-) True G121188
TU151991 lncRNA upstream 1110562 5858001 ~ 5861642 (-) True G121271
TU151999 lncRNA upstream 1124229 5871668 ~ 5874136 (-) True G121274
AMCG00002137 mRNA downstream 68137 4651295 ~ 4673352 (-) True AMCG00002137
AMCG00002138 mRNA downstream 104997 4602406 ~ 4636492 (-) True AMCG00002138
AMCG00002139 mRNA downstream 141375 4594152 ~ 4600114 (-) True AMCG00002139
AMCG00002136 mRNA downstream 162317 4570976 ~ 4579172 (-) True AMCG00002136
AMCG00002132 mRNA downstream 318213 4414282 ~ 4423276 (-) True AMCG00002132
AMCG00002142 mRNA upstream 1729 4749168 ~ 4752332 (-) True AMCG00002142
AMCG00002144 mRNA upstream 49950 4797389 ~ 4811362 (-) True AMCG00002144
AMCG00002154 mRNA upstream 453979 5201418 ~ 5214408 (-) True AMCG00002154
AMCG00002153 mRNA upstream 504936 5252375 ~ 5254786 (-) True AMCG00002153
AMCG00002155 mRNA upstream 516568 5264007 ~ 5286782 (-) True AMCG00002155
TU151612 other downstream 521612 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 954945 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 1025237 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 1613545 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 1736572 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 3089056 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 5084472 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 5094656 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 6777454 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 6920316 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile