RNA id: AMCG00002151



Basic Information


Item Value
RNA id AMCG00002151
length 731
RNA type mRNA
GC content 0.60
exon number 4
gene id AMCG00002151
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5238311 ~ 5240700 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTTTGAAATCCAGCTCTGGTATTGACACCTCTGAACAGGCTGAAGTTAACGTTGTGCAGTGGGCAGGTATGGCAGGAGCTCAAAGCGACCCTCACAAGTGGAAGATGCCCGGCTGGAGAATAGAGCAGAAGTATTCTAATAAAGTTCTCCTTGGAAACTGGGTGGAAGAAAGGCTGCAGttcAATCGACAGCATCAGACTGCCAGCAGCAGCCACCGCCTGGACTACCGACCCCACCGAGACAGCCGGCCCGATACTATAATGAGGAGTGCAGCCATTCGGAGAGCAGAGGTACCCCCTTTATCTCACCCCCCTCACTCTCACTACCTGGTGTCTCTGTATGATGAAGTGTATAACCGCAAGGGAAACTGCACCCTGCCCCCTCTACGCTCCTGGGATGGGGACAAGTTGGCCTGGGTGCCCGAGAGGACAGACCACCCCGTGCAGGATCCTCCTACCAATTTCGGGCTCCTGCAGTCGCGCCTCTCTCGGTGGAACCGCCAGGAGGCCCCCTTCCGGCTCCAGAGCGTGTACAGGACCTCGTTCCCACACCACCCCTCCGCGGCCTTCTCCCAGCCCCGCTTCGCCACTGCCCGTCGCCAGCTCTCCAGCCACCTGCACATCCACAACAGAGTCAACAAGGATCTGGACCTGAAGGACAGACCCTGCCGACAGGTGCCCGACAGCCTGCCTTGTGTGCCGCTGGGTGGGACTGCGGCCCAGAGCACCGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151880 lncRNA upstream 10212 5227674 ~ 5228099 (+) True G121187
TU151864 lncRNA upstream 33697 5202849 ~ 5204614 (+) True G121178
TU151862 lncRNA upstream 35849 5201402 ~ 5202462 (+) True G121176
TU151783 lncRNA upstream 485977 4749128 ~ 4752334 (+) True G121114
TU151688 lncRNA upstream 656031 4581973 ~ 4582280 (+) True G121045
TU151892 lncRNA downstream 3009 5243709 ~ 5275923 (+) True G121198
TU151928 lncRNA downstream 233436 5474136 ~ 5570247 (+) True G121228
TU152159 lncRNA downstream 1036818 6277518 ~ 6277900 (+) True G121402
TU152177 lncRNA downstream 1086497 6327197 ~ 6327481 (+) True G121417
TU152324 lncRNA downstream 1552276 6792976 ~ 6798043 (+) True G121526
AMCG00002152 mRNA upstream 11655 5219268 ~ 5226656 (+) False AMCG00002152
AMCG00002150 mRNA upstream 42218 5128059 ~ 5196093 (+) True AMCG00002150
AMCG00002149 mRNA upstream 148439 5084895 ~ 5089872 (+) True AMCG00002149
AMCG00002147 mRNA upstream 201526 5034310 ~ 5036785 (+) True AMCG00002147
AMCG00002148 mRNA upstream 215627 5014750 ~ 5022684 (+) True AMCG00002148
AMCG00002159 mRNA downstream 529552 5770252 ~ 5776525 (+) True AMCG00002159
AMCG00002156 mRNA downstream 620738 5861438 ~ 5872711 (+) True AMCG00002156
AMCG00002161 mRNA downstream 673571 5914271 ~ 5916094 (+) True AMCG00002161
AMCG00002160 mRNA downstream 678926 5919626 ~ 5938059 (+) True AMCG00002160
AMCG00002163 mRNA downstream 699185 5939885 ~ 5962194 (+) True AMCG00002163
TU151873 other upstream 14813 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 1698757 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 1701883 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 2278836 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 3297495 1924022 ~ 1940816 (+) True G120518
TU152254 other downstream 1345954 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 1345954 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 2153100 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 3513026 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 4603580 9844280 ~ 9851306 (+) False AMCG00002272

Expression Profile