RNA id: AMCG00002153


Basic Information

Item Value
RNA id AMCG00002153
length 2412
RNA type mRNA
GC content 0.52
exon number 1
gene id AMCG00002153
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5252375 ~ 5254786 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAATAGCTGATCTCCTGGGTGTTCAGTTCGACATGCAGCTGCTGGGCAAGCTGTCGGTCTCCGTGGCGGCTGTGCTGCTCATTTCATGGGCTTATAAATTCTACAGATCCAGGGGGCAGAGGGTTCACCGAAACGGATCAGACCAGAGTAATGGAAATGTACCTCAGCAGGGGCCAGGAGAGGTGACTGCGGGCTCCTGCATCAACTGCAACTCGGAGCTGCGTCCACGACGGAAAAGCCGGCCCGGGGATGCTGACAAGGggacttttgaaaataaacctgATACAGGGACTAAGGCATGTGACATAAGTCTGGCAAAGGATCCAAGTGTGCCTGCAGATGTGCATGTGGTGAATGGGGTTTGTCCTGTACGCCAGGGCACTGAAGCGCAGAGCCAGATGCCTGCCTCTGAACAGAACAGTGCCGACGCCACGCAGAGAGAAATTAGTTCCAGTCTTCTGGAGCCCCACGAACAGACTGATAGTTTTGTCCTCAGCAGTACATTGTCACCTCCTGCTGCAAAGGAACTGGGCCGGGCCAGTCCCACAGGCGGGCGATCCCCACGGCTGCTGAGGAAGCTGGAGCCCAGCGGGGCTGGTGTGGGGCGAGAGCTGAGACAGGACCTAGAGCATCCGGGCTCCTACTTCAGCTTCCAGTCCAAGGCCGAGATTAAAGTGGAAGACGGCGATCTCTTGCTGGAGAGACCTGGAGCTGAGCCACTGGAGGTGCGTGGGAAAATCTATGACTACTACGTGGAGTCTGCCTCCCAGTCCATCTCGGATGACAGTGCCTTCCAGTCGCATTTCTCCAGCCCCACACGCAGGCGCTACGAGGACTCTACTTTGCAGGACTCACTTCTGATGGAGCTGGAAGGAACATGGGAGAGGAGACGTGCTGGCAACAGCGGAGGCGAACGATCCGTAAAATCAAGTCCTTTAACGTCCCCCGTAATCACCCGGGATCTTGTTTTCACAGAGGATCCTGAGTTCCACAGTAAAGATGCACCTTTAAGTCTGATGTCCCTTCCTTCTGAGAAGCACAGACACGGCCTCATCCGCAAGGAGAGCATTTCGCAGATTGTGGAGAACTCGGACCTCCAAATCCCCTTTCTGGATCCCAGGGCTTCCACTCCAATGCACAGCAGGCTCAGCTCCAGAACTGCGTCATCAGAGGACCTCTGTCCCAGTCCTGTGAGTCCCTTGACAGACTCTGTGTTCCTTACTGGAACTAGCTTAGAAATGGTGGCTGGAGCCAATTTTCTACAAATGCCCATGGAGAACATAGACAGTTCTGAATTGGAGAGCCTAAAGTGCAAACTGGACTTGGGAAACTGTCTCCAAGCACTCAGCCTGGCCAGAAAGCATGGCATTGATGACCTCCAacaagcagttttgaaaatcatgTCTGATAACTATCTTCAAGTCTTGAGAGACCCAGGGTTGTACGGGAAGCTGAGAGCGGATGACAGAGATCAAATTCAAAAGCAGCGAATGAAAGGCAGACGATATCTCGTGGTAGCAGATATAGACCCACAAGACTGGACGAGGCCTAATGCAAATGGTGCCGAAGCAGGCCAAAGCAGGACCTCAAGCAGACTCTACTTTTACGATGACTATAAAGACATATGGCATCCCTTGAGCAGCCTTCCTAAAGAGGTCATATCTAAAGGATGCTCCATGTGTACCATGGACAACTATCTTTTCATCGCTGCTGGCTGCCAAGGATCTGACCTCAAGCCGTCTAGAAGCGTCTTCTGTTACAACCCTGTAACAGGTATCTGGAAGGAGATCTGCCCCCTGAATGAAGCTAGACCCCAGTGCAAACTAGTGGCCTTACAGGGCTACGTTTATGCTATCGGGGGAGAGTGCCTTTACACTGTGGAGCGCTATGACCCACGTGCCGATAGATGGTCCTTTGTAGCGCCTTTGCCCAACGACACTTTTGCCGTGGCCCACCGAGCCACAGCATGCAACGGACAGCTCTTTGTCTCTGGGGGAACTTTAAAATACACTCTGCTTCGCTACAACCCCAAGACAGACTCGTGGAAGGTAAGCTTGATCGTAGGGAGTAAAGAGCGAACCACAGAGATGGTGGCCATAAGAAACTTCATCTACCGCTTTGATGTCAACCCTGCTCTGGGTATCAGCGTGTACCGTTACCACGTCATAGCCCGGCTATGGTATGAATGCTCCACCAAGCGCTTACCCTACTGTGCAGCCTTCCAGTGTGCAAACATTGATAACCTGATCTACTGTATCAACCGTCAGTTCACAGTGAGGTTTGTGGCTGATGAGGTGTCTCCTTTCTTCGTGGCAGATGAATTGAAAGTTCTGACAATGGCCAAGgggattttgtttcctttagtTCTTGTCCTTCCGGAGAAAGAAACTCTGCAGACCAGAGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151881 lncRNA downstream 24244 5227674 ~ 5228131 (-) True G121188
TU151836 lncRNA downstream 115369 5128038 ~ 5137006 (-) True G121152
TU151835 lncRNA downstream 136358 5110602 ~ 5116017 (-) True G121151
TU151778 lncRNA downstream 530194 4716592 ~ 4722181 (-) True G121111
TU151682 lncRNA downstream 683081 4567439 ~ 4569294 (-) True G121039
TU151991 lncRNA upstream 603215 5858001 ~ 5861642 (-) True G121271
TU151999 lncRNA upstream 616882 5871668 ~ 5874136 (-) True G121274
TU152015 lncRNA upstream 678872 5933658 ~ 5937833 (-) True G121288
TU152051 lncRNA upstream 720939 5975725 ~ 5979623 (-) False AMCG00002167
TU152141 lncRNA upstream 955799 6210585 ~ 6213660 (-) True G121384
AMCG00002154 mRNA downstream 37967 5201418 ~ 5214408 (-) True AMCG00002154
AMCG00002144 mRNA downstream 441013 4797389 ~ 4811362 (-) True AMCG00002144
AMCG00002142 mRNA downstream 500043 4749168 ~ 4752332 (-) True AMCG00002142
AMCG00002141 mRNA downstream 504936 4741489 ~ 4747439 (-) True AMCG00002141
AMCG00002137 mRNA downstream 579023 4651295 ~ 4673352 (-) True AMCG00002137
AMCG00002155 mRNA upstream 9221 5264007 ~ 5286782 (-) True AMCG00002155
AMCG00002158 mRNA upstream 506048 5760834 ~ 5786032 (-) True AMCG00002158
AMCG00002157 mRNA upstream 550056 5804842 ~ 5827525 (-) True AMCG00002157
AMCG00002166 mRNA upstream 619996 5874782 ~ 5883711 (-) True AMCG00002166
AMCG00002164 mRNA upstream 633704 5888490 ~ 5903073 (-) True AMCG00002164
TU151612 other downstream 1032498 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 1465831 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 1536123 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 2124431 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 2247458 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 2581709 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 4577125 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 4587309 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 6270107 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 6412969 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile