RNA id: AMCG00002154


Basic Information

Item Value
RNA id AMCG00002154
length 2219
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00002154
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5201418 ~ 5214408 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGTGGGGAAACGCAGAGAGGAAAACAGCCACTCACGGACAACACAGTAGTGCAATATTCCCAAACACTTAAACTGCCAATCAGGATTAATGGTCTATAAAAACTCCCCATCAGATCCAAGTCTCCCAGACACTGAGAGGATGGAAAAAGACTACCGAGGAGGAGCAGCCCAGTGATCATGTCTCCAGGATAGACAGCCTGCTCCCGGCAGCGCTCAGAGCCAGCGACTCCAATACGCGGCGCACGGAGAGAAGGCTCGCTTGTTATTTCCAAACTGCACACCGTGGTGACGGGGTGCTGAAACGGGGGCTGTTTCACTTTAAAGAGAAGAGGAGGGCAGAGCTGGTTTAGTCTGCATTGCCGCAGCAGTGTGGCGGACTTGCCTTCCTTTGACACAGGGCAAAGTTTATGTGCCACTGATCCTGCGCGCAACTTGCGAGGGCAGGCATGGATCTGTCGCTGCGGTTTATTCTGGTGCGCTTGTAACTCTGAACTGCGCTTGTAAAGCCACAGCTTTCTGGTGACATCCCCTGTGTGGCCATCACGCTGGTAAGAGAAGAAAGCCCGAGCGGAGGGCAGATCTACACGGGTGCCGGACTCGGCGGCTCTGGTGCGCTGCTTTGGTGCAACTCCACGTCTCATCCAGACCGGCTCAGTCAGCCCTTGCTCCCCCGCAGCCGCAGACGACATGGAGTGGAAGTGTCTGGGATCCGCGGTGCTTTTCCCCATCCAGATGATCTACTACATAGTCAAAGCTGGCGTGTGCATGTTGCTGCCGACCCGAATGAGAGACCTGAGCCGAGAGGTGGTGCTGATCACCGGCGGGGGAAGAGGCATCGGCCGCCACCTGGCCACGGAGTTTGCGAAGCAGGGGGCTAAGAAGGTGATCCTGTGGGGCCGCACTGAGAAGTGCCTGAAGGAGACCAGCGAGGAGATCAATCTCATGGGGACGGAGTGCCATTACTTCCTGTGCGATGTGGGGAACAGGGAGGAAGTGTACAAGCAAGCCAAGGTGGTGCGGGAGAGGGTGGGAGATGTCACCATACTCGTGAACAATGCTGCAGTGGTTCATGGGAAAAGTCTAATAGACAGCGATGACGATGCCCTCCTAAAATCACAGCACATCAACACACTGGGACAGTTCTGGACGACCAAGGCCTTTCTGCCGAGGATGCTGGAGCTGCAGAATGGCCACGTGGTTTGCATTAACTCCGTCTTATCGCTTTCTTCCATCCCTGGGGCCATCGACTACTGCACCTCCAAAGCCTCCTCGTTCGCCTTCATGGAGAGCCTCACGCTGGGGTTGCTGGACTGCCCAGGCGTGGCCACGACCACTGTACTGCCTTTCCACACCAACACGGAGATGTTCCAGGGCATGAGAGTCAGATTCCCCAATCTCTTCCCTCCCCTGAAGCCAGAGACAGTGGCCAGGCGGACCGTAGAGGCGGTACGGACCAACACAGCCTTTCTCTACCTGCCCTGGACGATGCATGCACTAGTCATACTCAAAAGCTTCATTCCACAGCAAGCACTTGAAGAAATCCACAGGTTCACGGGAACCTACACCTGCATGAACACCTTCAAAGGACGGACATGAGAGGCACATGGAGAAATTAAAGACTAACTGAGCAGCGAGAAAGCGTTAACATTAACACACGGAAAGCCACTCTTAAGGGACAAGAAAATGATGGGCAGCTTGGATTAACATTTACAGTGGGCAGAGAAGGCTGATGGACCTTTTGGAGACTCTTCCTGAGAATATTTATGAGCCCATAACCTTGCGTTTGATTGACTGACATGTTTTTAGTTGCTGCTACAGGCATATTTCTTCCATAGATACTCACCTTTTTGGTTCATACTCTggatgtgcattttatttctgtttcaattCAAGTATTAAGATTCTGGACCGGTGTCCCCACTGGAGCTCAaaatggaggaaagaaaaagagcaTCTGTGTATCTCTGAGAATCTCCCTGGTAGCAAGAGACAATACTTTAAAACTATCAGTGGATCTGATATAAAGACATGTTTTCCAGGGTTAGTTTTAGGTAgttctccattttttttctttttttcttttaaatctgtctttgatttgtttgcaGGGCTAACCTGCAACATATATGGTCTTTAACATCATTGTTTTGAATGAGTTCAGTTGAACACGTGATGTatgtctaaattaattaaaaaataaatgcataaataaaaat

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11146 DHRS3; short-chain dehydrogenase/reductase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151836 lncRNA downstream 64412 5128038 ~ 5137006 (-) True G121152
TU151835 lncRNA downstream 85401 5110602 ~ 5116017 (-) True G121151
TU151778 lncRNA downstream 479237 4716592 ~ 4722181 (-) True G121111
TU151682 lncRNA downstream 632124 4567439 ~ 4569294 (-) True G121039
TU151590 lncRNA downstream 1114000 4087108 ~ 4087418 (-) True G120975
TU151881 lncRNA upstream 13266 5227674 ~ 5228131 (-) True G121188
TU151991 lncRNA upstream 643593 5858001 ~ 5861642 (-) True G121271
TU151999 lncRNA upstream 657260 5871668 ~ 5874136 (-) True G121274
TU152015 lncRNA upstream 719250 5933658 ~ 5937833 (-) True G121288
TU152051 lncRNA upstream 761317 5975725 ~ 5979623 (-) False AMCG00002167
AMCG00002144 mRNA downstream 390056 4797389 ~ 4811362 (-) True AMCG00002144
AMCG00002142 mRNA downstream 449086 4749168 ~ 4752332 (-) True AMCG00002142
AMCG00002141 mRNA downstream 453979 4741489 ~ 4747439 (-) True AMCG00002141
AMCG00002137 mRNA downstream 528066 4651295 ~ 4673352 (-) True AMCG00002137
AMCG00002138 mRNA downstream 564926 4602406 ~ 4636492 (-) True AMCG00002138
AMCG00002153 mRNA upstream 37967 5252375 ~ 5254786 (-) True AMCG00002153
AMCG00002155 mRNA upstream 49599 5264007 ~ 5286782 (-) True AMCG00002155
AMCG00002158 mRNA upstream 546426 5760834 ~ 5786032 (-) True AMCG00002158
AMCG00002157 mRNA upstream 590434 5804842 ~ 5827525 (-) True AMCG00002157
AMCG00002166 mRNA upstream 660374 5874782 ~ 5883711 (-) True AMCG00002166
TU151612 other downstream 981541 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 1414874 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 1485166 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 2073474 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 2196501 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 2622087 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 4617503 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 4627687 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 6310485 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 6453347 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile